Job Description P33352 Confidence 97.50% Date Thu Jan 5 11:51:53 GMT 2012 Rank 41 Aligned Residues 149 % Identity 19% Template c3eg9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	I	.	R	T	H	L	V	A	F	D	T	S	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	P	Q	M	P	L	I	F	L	Y	V	V	D	T	C	M	E	D	E	D	L	Q	A	L	K	E	S	M	Q	M	S	L	S	L	L	P	P	T	A	L	V	G	L	I	T	F	G	R	M	V	Q	V	H	E	L	G	C	E	G	I	S	K	S	Y	V	F	R	G	T	K	D	L	S	A	K	Q	L	Q	E
Template Known Secondary structure			S															S																			S		T	T									S	S								S		T	T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
															260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.										.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.															.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.															.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	T	A	D	V	A	D	P	V	E	L	L	M	K	V	Q	L	G	G	G	T	.	.	.	.	.	.	.	.	.	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	.	.	.	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		M	L	G	L	S	K	V	S	N	R	F	L	Q	P	V	Q	K	I	D	M	N	L	T	D	L	L	G	E	L	Q	R	D	P	W	P	V	P	Q	G	K	R	P	L	R	S	S	G	V	A	L	S	I	A	V	G	L	L	E	C	T	F	P	N	T	G	A	R	I	M	M	F	I	G	G	P	A	T	Q	G	P
Template Known Secondary structure			T	T							S	S	S																						S				T	T	B																			T	T	S		S	S									S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		315	.	.	.																															.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Query Sequence		S	L	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	.	G	A	Q	I	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																		.
Template Conservation																																																					.	.	.	.
Template Sequence		G	M	V	V	G	D	E	L	K	T	P	I	R	S	W	H	D	I	D	K	D	N	A	K	Y	V	K	K	G	T	K	H	F	E	A	L	A	N	R	A	A	T	T	G	H	V	I	D	I	Y	A	.	.	.	.	C	A	L	D	Q	T	G	L	L	E	M	K	C	C	P	N	L	T	G	G	Y	M	V
Template Known Secondary structure		S			S		S	B	T	T	S										T	T			T	T																			T								.	.	.	.			S	S			S					T						S	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.					350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions