Job Description P33352 Confidence 21.17% Date Thu Jan 5 11:51:53 GMT 2012 Rank 100 Aligned Residues 63 % Identity 6% Template c3cueM_ PDB info PDB header:protein transport Chain: M: PDB Molecule:transport protein particle 23 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab2 ypt1p Resolution 3.70 Å

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		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q	T	L	T	G	L	K	F	V	A	I	S	S	S	V	M	N	L	A	I	Q	I	A	D	N	F	L	R	K	V	Y	C	L	Y	S	D	Y	V	M	K	D	P	S	Y	S	M	E	M	P	I	R	S	N	L	F	D	E	K	V	K	K	M
Template Known Secondary structure					T	T	S								S	S																										S		T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions