Job Description P33352 Confidence 99.73% Date Thu Jan 5 11:51:53 GMT 2012 Rank 1 Aligned Residues 281 % Identity 14% Template c2nvoA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:ro sixty-related protein, rsr; PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein Resolution 1.89 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		P	Q	Q	V	I	E	R	L	E	S	D	A	V	L	R	Y	G	I	E	D	V	V	T	N	L	D	V	L	E	R	M	Q	P	S	E	S	L	L	R	A	V	L	H	T	K	H	L	M	N	P	E	V	L	A	A	.	A	R	R	I	V	C	Q	V	V	E	E	I	M	A	R	L	A	K	E	V	R	Q	A	F
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		D	A	A	A	A	A	L	M	Q	E	Y	R	L	P	L	E	A	V	P	T	H	V	R	G	A	E	V	Y	R	A	A	M	Q	T	N	G	L	T	W	L	L	R	N	L	G	N	L	G	R	V	G	V	L	T	P	N	D	S	A	T	V	Q	A	V	I	E	R	L	T	D	P	A	A	L	K	R	G	R	I	H
Template Known Secondary structure													T			G	G	G	S		G	G	G											T	T																T	T	S	S		T	T													T								T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		S	G	V	R	D	R	R	R	R	S	F	I	P	L	A	R	N	F	D	F	K	S	T	L	R	A	N	L	Q	H	W	H	P	Q	H	G	K	L	Y	I	E	S	P	R	F	N	S	R	I	K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	.	.	.	.	.	.	.	.	.	D	S
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		P	L	D	A	L	K	A	R	L	V	Y	A	Q	G	.	.	.	.	.	.	.	Q	G	V	R	G	K	G	T	W	L	P	V	P	R	V	V	D	A	L	E	E	A	F	T	L	A	F	G	N	V	Q	P	A	N	T	R	H	L	L	A	L	D	V	S	G	S	M	T	C	G	D	V	A	G	V	P	G	L	T
Template Known Secondary structure														T	S	.	.	.	.	.	.	.	B		S	T	T			B																			G	G	G						S									S	G	G	G	G	S			G	G	G		T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.								.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	I	R	T	H	L	V	A	F	D	T	S	V	V	D	L	T	A	.	.	.	.	D	V	A	D	P	V	E	L	L	M	K	V	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	P	A	K	S	V	I	I	L	V	S
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.														.																.	.
Template Conservation																																																				.																.	.
Template Sequence		P	N	M	A	A	A	A	M	S	L	I	A	L	R	T	E	P	D	A	L	T	M	G	F	A	E	Q	F	R	P	L	G	I	T	P	R	D	T	L	E	S	A	M	Q	K	A	Q	S	V	S	.	F	G	G	T	D	C	A	Q	P	I	L	W	A	A	Q	.	.	E	R	L	D	V	D	T	F	V	V	Y	T
Template Known Secondary structure																	S	S								B	S	S								T	T										T			S	S	.	B					T	T									.	.	T	T				S
Template Predicted Secondary structure																																																				.																.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		D	F	Y	E	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	S	.	.	.	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	G	A	Q	I	A	A	M	T	P	G	E	L	A	S	W	L	A	E	N	L	Q	S
Query Conservation																							.	.	.
Alig confidence																							.	.	.									.													.	.	.	.	.	.
Template Conservation																																		.													.	.	.	.	.	.
Template Sequence		D	N	E	T	W	A	G	Q	V	H	P	T	V	A	L	D	Q	Y	A	Q	K	M	G	R	A	P	K	L	I	V	V	G	.	L	T	A	T	E	F	S	I	A	D	P	Q	.	.	.	.	.	.	R	R	D	M	L	D	V	V	G	F	D	A	A	A	P	N	V	M	T	A	F	A	R	G
Template Known Secondary structure		S	S						S	S														S										.	T	T		S					S		T	T	.	.	.	.	.	.		S	S									T	T										T	T
Template Predicted Secondary structure																																		.													.	.	.	.	.	.
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.		.	.	.	.	.	.	500	.	.	.	.	.							.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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