Job Description P33352 Confidence 99.32% Date Thu Jan 5 11:51:53 GMT 2012 Rank 14 Aligned Residues 159 % Identity 15% Template c2b2xB_ PDB info PDB header:immune system Chain: B: PDB Molecule:integrin alpha-1; PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab Resolution 2.20 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																					.	.	.	.	.
Query SS confidence																																.																					.	.	.	.	.
Query Sequence		Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	.	G	I	R	T	H	L	V	A	F	D	T	S	V	V	D	L	T	A	D	V	.	.	.	.	.	A	D	P	V	E	L	L	M	K	V	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y
Query Conservation																																.																					.	.	.	.	.
Alig confidence																																.																					.	.	.	.	.
Template Conservation
Template Sequence		D	I	V	I	V	L	D	G	S	N	S	I	Y	P	W	E	S	V	I	A	F	L	N	D	L	L	K	R	G	P	K	Q	T	Q	V	G	I	V	Q	Y	G	E	N	V	T	H	E	F	N	L	N	K	Y	S	E	E	V	L	V	A	A	N	K	I	V	Q	R	G	G	R	Q	T	M	T	A	L	G	I	D	T
Template Known Secondary structure										S	T	T															T	T			T	T	S									S	S	S							T	T	S										T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.
Predicted Secondary structure							.	.	.																																																														.	.
Query SS confidence							.	.	.																																																														.	.
Query Sequence		G	R	Q	L	I	.	.	.	E	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	.	.	V	G	A	Q	I	A	A	M	T
Query Conservation							.	.	.																																																														.	.
Alig confidence							.	.	.																		.																								.																				.	.
Template Conservation																											.																								.
Template Sequence		A	R	K	E	A	F	T	E	A	R	G	A	R	K	V	M	V	I	V	T	D	G	E	S	H	.	D	N	Y	R	L	K	Q	V	I	Q	D	C	E	D	E	N	I	Q	R	F	S	I	A	.	I	L	G	H	Y	S	T	E	K	F	V	E	E	I	K	S	I	A	S	E	P	T	E	K	H	F	F	N	V	S
Template Known Secondary structure				T	T	T	S	S	G	G	G	T										S	S			T	.	T	G	G	G											T	T								.			T	T												T	T	S		S	S	T	T	S	S					S
Template Predicted Secondary structure																											.																								.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		365	.	.					.	.	370	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		P	G	E	.	.	.	.	L	A	S	W	L	A	E	N	L
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		D	E	L	A	L	V	T	I	V	K	A	L	G	E	R	I
Template Known Secondary structure		S	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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