Job Description P33352 Confidence 99.47% Date Thu Jan 5 11:51:53 GMT 2012 Rank 11 Aligned Residues 222 % Identity 15% Template c1yvrA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen Resolution 1.95 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	V	V	T	N	L	D	V	L	E	R	M	Q	P	S	E	S	L	L	R	A	V	L	H	T	K	H	L	M	N	P	E	V	L	A	A	A	R	R	I	V	C	Q	V	V	E	E	I	M	A	R	L	A	K	E	V	R	Q	A	F	S	G	V	R	D	R	R	R	R	S	F	I	P	L	A	R	N	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	H	L	K	S	K	E	I	W	K	S	L	L	Q	D	M	P	L	T	A	L	L	R	N	L	G	K	M	T	A	D	S	V	L	A	P	A	S	S	E	V	S	S	V	C	E	R	L	T	N	E	K	L	L	K	K	A	R	I	H	P	F	H	I	L	V	A	L	E	T	Y	K	K	G	H	L	R	W	I
Template Known Secondary structure		T	T	G	G	G											T																T	T	T	T		T	T												T								T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		F	K	S	T	L	R	A	N	L	Q	H	W	H	P	Q	H	G	K	L	Y	I	E	S	P	R	F	N	S	R	I	K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	.	.	.	.	.	.	.	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	I	R	T	H	L
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	T	S	I	V	E	A	L	D	N	.	.	.	.	.	.	.	.	.	.	.	.	A	F	Y	K	S	F	K	L	V	E	P	T	G	K	R	F	L	L	A	I	D	V	S	A	S	M	N	Q	R	V	L	G	S	I	L	N	A	S	V	V	A	A	A	M	C	M	L	V	A	R	T	E	K	D	S	H	M
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.					T	S																	S	G	G	G	G	S	B	S	T	T	S	S		B																	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.													.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		252	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																																																																	.
Query SS confidence													.	.	.	.																																																																	.
Query Sequence		V	A	F	D	T	S	V	V	D	L	T	.	.	.	.	A	D	V	A	D	P	V	E	L	L	M	K	V	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	.
Query Conservation													.	.	.	.																																																																	.
Alig confidence													.	.	.	.															.																	.	.																																.
Template Conservation																															.																	.	.
Template Sequence		V	A	F	S	D	E	M	L	P	C	P	I	T	V	N	M	L	L	H	E	V	V	E	K	M	S	D	I	T	.	M	G	S	T	D	C	A	L	P	M	L	W	A	Q	K	T	.	.	N	T	A	A	D	I	F	I	V	F	T	D	C	E	T	N	V	E	D	V	H	P	A	T	A	L	K	Q	Y	R	E	K
Template Known Secondary structure					S	S	S					S			T	T	S										T	T			.		S				T	T									T	.	.	T				S												S	S	S
Template Predicted Secondary structure																															.																	.	.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.			.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
				327	.	.	330	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	G	I	K	V	L	G	L	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		M	G	I	P	A	K	L	I	V	C	A
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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