Return to main results Retrieve Phyre Job Id

Job DescriptionP33352
Confidence98.38%DateThu Jan 5 11:51:53 GMT 2012
Rank34Aligned Residues146
% Identity22%Templatec1u8cB_
PDB info PDB header:cell adhesionChain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   214.....220.........230 .........240.........250......
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Query Sequence  QWQLVLLVDQSGSMVDS. . . . . VIHSAVMAACLWQLPGIRTHLVAFDT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGY
Template Known Secondary structure 

BGGGTTTTSTTTSTTTTT
S




STTTTT
SSSGGGSSS
TTTSS





S
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   1111........1120.........1130.........1140.........1150.........1160.........1170.........1180.........1190
 
   257..260.........270.........280.........290.... .....300.........310.
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Query Sequence  . SVVDLTADVADPVELLMKVQLGGGTNIASAVEYGRQLI. . . . . . . . . EQPAKSVIILVSDFYEG. . . . . . . . . . . . . . .
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Template Sequence  KHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPND
Template Known Secondary structure 


SBS
TTTTTT


B

SSSSB

TTTT


TTSSS
B

TTGGGTTT

S


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   1191........1200.........1210.........1220.........1230.........1240.........1250.........1260.........1270
 
   312.......320.........330.........340.........350...... ...360......
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Query Sequence  . . . . . . . . . . . . . . . . GSSSLLTHQVKKCVQSGIKVLGLAALDSTATPCYDRDTAQALVNV. . GAQIAAMTPG
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Template Sequence  GQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLI. . . . . . . FAVTENVVNLYQNYSELIPGTTVGVLSMD
Template Known Secondary structure 





TT
B
TTTTTS



TT

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TTSTT


TT
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   1271........1280.........1290.........1300....... ..1310.........1320.........1330......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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