Job Description P33352 Confidence 98.04% Date Thu Jan 5 11:51:53 GMT 2012 Rank 36 Aligned Residues 148 % Identity 23% Template c1pd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Resolution 2.60 Å

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		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.								.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	.	.	.	.	.	.	.	P	G	I	R	T	H	L	V	A	F	D	T	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	Q	P	P	P	A	T	Y	C	F	L	I	D	V	S	Q	S	S	I	K	S	G	L	L	A	T	T	I	N	T	L	L	Q	N	L	D	S	I	P	N	H	D	E	R	T	R	I	S	I	L	C	V	D	N	A	I	H	Y	F	K	I	P	L	D	S	E	N	I	N	M	M	D	I	A	D	L	E	E	P
Template Known Secondary structure		S	S						B								S							T											T	T	T	T	T	S			T	T	S										S	S	S									G	G	G										T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
						259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.							.	.	320	.	.
Predicted Secondary structure		.	.	.	.																		.	.	.	.	.	.																																											.	.	.	.	.	.
Query SS confidence		.	.	.	.																		.	.	.	.	.	.																																											.	.	.	.	.	.
Query Sequence		.	.	.	.	V	D	L	T	A	D	V	A	D	P	V	E	L	L	M	K	V	.	.	.	.	.	.	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S	S	L	L	.	.	.	.	.	.	T	H	Q	V	K
Query Conservation		.	.	.	.																		.	.	.	.	.	.																																											.	.	.	.	.	.
Alig confidence		.	.	.	.																		.	.	.	.	.	.																					.																						.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		N	S	M	V	V	S	L	K	A	C	R	Q	N	I	E	T	L	L	T	K	I	P	Q	I	F	Q	S	N	L	I	T	N	F	A	L	G	P	A	L	K	S	A	Y	H	L	I	G	.	G	V	G	G	K	I	I	V	V	S	G	T	L	P	N	L	G	I	G	K	L	Q	R	D	S	F	Y	K	N	F	T	I
Template Known Secondary structure		T	T	T	S			T	T	T	T															T	T	T																				T	.	T	T									S	S				S	S	T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	.	G	A	Q	I	A
Query Conservation																																				.
Alig confidence															.	.	.	.																		.
Template Conservation															.	.	.	.
Template Sequence		D	C	S	K	V	Q	I	T	V	D	L	F	L	.	.	.	.	A	S	E	D	Y	M	D	V	A	S	L	S	N	L	S	R	F	T	A	G	Q	T	H
Template Known Secondary structure				T	T	T	T								.	.	.	.			S	S													T	T	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.					.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions