Job Description P33352 Confidence 99.14% Date Thu Jan 5 11:51:53 GMT 2012 Rank 23 Aligned Residues 129 % Identity 17% Template c1jeyB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna Resolution 2.50 Å

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		217	.	.	220	.	.	.	.	.	.	.	.													.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.																		.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	L	L	V	D	Q	S	G	S	M	V	.	.	.	.	.	.	.	.	.	.	.	.	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	I	R	T	H	L	V	A	F	D	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	L	T	A	D	V	A	D
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	L	C	M	D	V	G	F	T	M	S	N	S	I	P	G	I	E	S	P	F	E	Q	A	K	K	V	I	T	M	F	V	Q	R	Q	V	F	A	E	N	K	D	E	I	A	L	V	L	F	G	T	D	G	T	D	N	P	L	S	G	G	D	Q	Y	Q	N	I	T	V	H	R	H	L	M	L	P	D	F	D
Template Known Secondary structure										G	G	G	G			B	T	T	B																					T	T											S		S	S		B	S	T	T		T	T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																			.	.	.	.	.	.
Query SS confidence														.	.																			.	.	.	.	.	.
Query Sequence		P	V	E	L	L	M	K	V	Q	L	G	G	.	.	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	P	.	.	.	.	.	.	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S
Query Conservation														.	.																			.	.	.	.	.	.
Alig confidence														.	.																			.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	E	D	I	E	S	K	I	Q	P	G	S	Q	Q	A	D	F	L	D	A	L	I	V	S	M	D	V	I	Q	H	E	T	I	G	K	K	F	E	K	R	H	I	E	I	F	T	D	L	S	S	R	F	S	K	S	Q	L	D	I	I	I	H	S	L	K	K	C	D	I	S	L	Q	F	F	L	P	F	S	L
Template Known Secondary structure								T	T					S	S																			S	S	S	S			S												S					T	T											T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	T	P	C	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	P	F	R	L
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions