Job Description P33352 Confidence 98.16% Date Thu Jan 5 11:51:53 GMT 2012 Rank 35 Aligned Residues 125 % Identity 18% Template c1jeqA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:ku70; PDBTitle: crystal structure of the ku heterodimer Resolution 2.70 Å

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		217	.	.	220	.	.	.	.	.	.	.	.															.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.														.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	L	L	V	D	Q	S	G	S	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	I	R	T	H	L	V	A	F	D	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	L	T	A	D	V	A	D	P	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		L	I	F	L	V	D	A	S	K	A	M	F	E	S	Q	S	E	D	E	L	T	P	F	D	M	S	I	Q	C	I	Q	S	V	Y	I	S	K	I	I	S	S	.	D	R	D	L	L	A	V	V	F	Y	G	T	E	K	D	K	N	S	V	N	F	K	N	I	Y	V	L	Q	E	L	D	N	P	G	A	K	R	I
Template Known Secondary structure									S	S	G	G	G	S			S	S	S	S																					T	T	.											S		S	S		B	S	T	T			S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		270	.	.	.	.	.														.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300					.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.								.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.								.	.	.	.	.
Query Sequence		E	L	L	M	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	P	A	K	S	.	.	.	.	V	I	I	L	V	S	D	.	.	.	.	.	F	Y	E	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	S
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.								.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.								.	.	.	.	.
Template Conservation
Template Sequence		L	E	L	D	Q	F	K	G	Q	Q	G	Q	K	R	F	Q	D	M	M	G	H	G	S	D	Y	S	L	S	E	V	L	W	V	C	A	N	L	F	S	D	V	Q	F	K	M	S	H	K	R	I	M	L	F	T	N	E	D	N	P	H	G	N	D	S	A	K	A	S	R	A	R	T	K	A	G	D	L	R	D	T
Template Known Secondary structure						T	T	S												T		S																			T			S			S									S		S		T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K	V	L	G	L	A	A	L	D	S	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	F	L	D	L	M	H	L	K	K	P	G	G	F
Template Known Secondary structure		T								B			T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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