Job Description P00961 Confidence 38.01% Date Wed Jan 25 15:20:10 GMT 2012 Rank 44 Aligned Residues 86 % Identity 9% Template c1z2zB_ PDB info PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 Resolution 2.60 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		T	D	K	G	E	W	L	L	Y	R	A	H	V	K	G	E	S	T	E	A	L	L	P	N	M	V	A	T	S	L	A	K	L	P	I	P	K	L	M	R	W	G	A	S	D	V	H	F	V	R	P	V	H	T	V	T	L	.	.	L	L	G	D	K	V	I	P	A	T	I	L	G	I	Q	S	D	R	V	I	R
Query Conservation																																																											.	.
Alig confidence																															.	.					.																						.	.
Template Conservation																															.	.					.
Template Sequence		G	E	E	G	K	Y	L	I	V	E	L	T	K	R	D	W	D	T	H	H	L	T	R	T	L	S	R	I	L	.	.	Q	V	S	Q	.	K	R	I	S	V	A	G	T	K	D	K	R	A	L	T	T	Q	K	I	S	I	F	D	T	D	A	S	E	I	E	K	I	H	L	K	D	I	E	L	K	V	L	G	R
Template Known Secondary structure		B	S		S	S										S															.	.	S	S		T	.	T	T				S					S	S	S										S			T	T								T	T
Template Predicted Secondary structure																															.	.					.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		188	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	R	F	M	G	E	P	E	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	K	S	V	E	L	G	D	L	W
Template Known Secondary structure			S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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