Job Description P09126 Confidence 43.28% Date Thu Jan 5 11:01:52 GMT 2012 Rank 137 Aligned Residues 220 % Identity 14% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.										.	.
Query SS confidence																																								.	.										.	.
Query Sequence		E	E	L	V	S	R	L	R	T	L	G	Q	V	A	W	H	F	P	L	I	E	F	S	P	G	Q	Q	L	P	Q	L	A	D	Q	L	A	A	L	.	.	G	E	S	D	L	L	F	A	L	.	.	S	Q	H	A	V	A	F	A	Q	S	Q	L	H	Q	Q	D	R	K	W	P	R	L	P	D	Y	F	A	I	G
Query Conservation																																								.	.										.	.
Alig confidence																									.															.	.										.	.															.	.	.	.	.	.
Template Conservation																									.																																										.	.	.	.	.	.
Template Sequence		A	S	F	E	K	R	L	Y	K	L	N	I	N	Y	Q	L	N	Q	V	F	T	R	P	.	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	.	.	.	.	.	.	T	N	T	K	L	I	L	Q	N
Template Known Secondary structure											T	T												T	.	T																T	T		S							S	S	S	T	T											.	.	.	.	.	.		S							T
Template Predicted Secondary structure																									.																																										.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																									.																											.	.	.	.	.	.
Query SS confidence																									.																											.	.	.	.	.	.
Query Sequence		R	T	T	A	L	A	L	H	T	V	S	G	Q	K	I	L	Y	P	Q	D	R	E	I	.	S	E	V	L	L	Q	L	P	E	L	Q	N	I	A	G	K	R	A	L	I	L	R	G	N	G	G	.	.	.	.	.	.	R	E	L	I	G	D	T	L	T	A	R	G	A	E	V	T	F	C	E	C	Y	Q	R	C
Query Conservation																									.																											.	.	.	.	.	.
Alig confidence																									.																											.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A
Template Known Secondary structure				S		B	G	G	G	T	T	S			S																						S		T	T									S	T	T																														S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																						.	.
Query SS confidence																			.																																						.	.
Query Sequence		A	I	H	Y	D	G	A	E	E	A	M	R	W	Q	A	R	E	.	V	T	M	V	V	V	T	S	G	E	M	L	Q	Q	L	W	S	L	I	P	Q	W	Y	R	E	H	W	L	L	H	C	R	L	L	V	V	S	.	.	E	R	L	A	K	L	A	R	E	L	G	W	Q	D	I	K	V	A	D	N	A	D	N
Query Conservation																			.																																						.	.
Alig confidence																			.																									.	.	.	.										.	.										.
Template Conservation																																												.	.	.	.																					.
Template Sequence		T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	.	G	D	L	D	I	T	V	M	R	M	N	D	D
Template Known Secondary structure		S																			S					S	S															T		.	.	.	.	T	T	S			B		S	B												.	T	S	S								T
Template Predicted Secondary structure																																												.	.	.	.																					.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.
		239	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	L	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	I	A	M	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions