Job Description P09126 Confidence 78.51% Date Thu Jan 5 11:01:52 GMT 2012 Rank 30 Aligned Residues 225 % Identity 12% Template c3o1hB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao Resolution 3.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.								.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																																						.	.									.	.
Query SS confidence															.	.	.	.	.	.	.																																						.	.									.	.
Query Sequence		M	S	I	L	V	T	R	P	S	P	A	G	E	.	.	.	.	.	.	.	E	L	V	S	R	L	R	T	L	G	Q	V	A	W	H	F	P	L	I	E	F	S	P	G	Q	Q	L	P	Q	L	A	D	Q	L	A	A	L	.	.	G	E	S	D	L	L	F	A	.	.	L	S	Q	H	A	V	A	F	A	Q	S
Query Conservation															.	.	.	.	.	.	.																																						.	.									.	.
Alig confidence															.	.	.	.	.	.	.																	.	.	.																			.	.									.	.
Template Conservation																																						.	.	.
Template Sequence		E	K	I	C	A	I	Y	P	H	L	K	D	S	Y	W	L	S	V	N	Y	G	M	V	S	E	A	E	K	Q	G	V	N	L	R	V	L	.	.	.	E	A	G	G	Y	P	N	K	S	R	Q	E	Q	Q	L	A	L	C	T	Q	W	G	A	N	A	I	I	L	G	T	V	D	P	H	A	Y	E	H	N	L	K
Template Known Secondary structure									S				S																	T	T							.	.	.			S	S	T	T															T	T		S							S	S	T	T	T	T	T	T	T	T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		Q	L	H	Q	Q	D	R	K	W	P	R	L	P	D	Y	F	A	I	G	R	T	T	A	L	A	L	H	T	V	S	G	Q	K	I	L	Y	P	Q	D	R	E	I	S	E	V	L	L	Q	L	P	E	L	Q	N	I	A	G	K	R	A	L	I	L	.	.	.	.	.	.	R	G	N	G	G	R	E	L	I	G	D
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																																																						.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		S	W	V	G	.	.	.	.	.	.	N	T	P	V	F	A	T	V	N	Q	L	D	L	D	E	E	Q	S	T	L	L	K	G	E	V	G	V	D	W	Y	W	M	G	Y	E	A	G	K	Y	L	A	E	R	H	P	K	G	S	G	K	T	N	I	A	L	L	L	G	P	R	T	K	P	V	T	T	G	F	Y	E
Template Known Secondary structure					T	.	.	.	.	.	.	T							S	S						T	T	T	T	T	S									T															S		T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		108	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		T	L	T	A	R	G	A	E	V	T	F	C	E	C	Y	Q	R	C	A	I	H	Y	D	G	A	E	E	A	M	R	W	Q	A	R	E	V	T	M	V	V	V	T	S	G	E	M	L	Q	Q	L	W	S	L	I	P	Q	W	Y	R	E	H	W	L	L	H	C	R	L	L	V	V	.	.	S	E	R	L	A	K	L
Query Conservation																																																																									.	.
Alig confidence											.	.																																																			.	.	.								.	.
Template Conservation											.	.																																																			.	.	.
Template Sequence		A	I	K	N	S	D	I	H	I	.	.	V	D	S	F	W	A	D	N	D	K	E	L	Q	R	N	L	V	Q	R	V	I	D	M	G	N	I	D	Y	I	V	G	S	A	V	A	I	E	A	A	I	S	E	L	R	S	A	D	K	T	H	.	.	.	D	I	G	L	V	S	V	Y	L	S	H	G	V	Y	R	G
Template Known Secondary structure				S	S	S	S				.	.								S															T				S																			T	S		T	T	.	.	.	T	S					S	S			T	T
Template Predicted Secondary structure											.	.																																																			.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	L	G	W	Q	D	I	K	V	A	D	N	A	D	N	D	A
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	L	R	.	N	K	V	L	F	A	P	T	D	K	M	V	Q	Q	G
Template Known Secondary structure				T	.	T	S			B
Template Predicted Secondary structure					.
Template SS confidence
		261	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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