Job Description P09126 Confidence 86.52% Date Thu Jan 5 11:01:52 GMT 2012 Rank 20 Aligned Residues 219 % Identity 12% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		E	E	L	V	S	R	L	R	T	L	G	Q	V	A	W	H	F	P	L	I	E	F	S	P	G	Q	Q	L	P	Q	L	A	D	Q	L	A	A	L	G	E	S	D	L	L	F	A	.	.	L	S	Q	H	A	V	A	F	A	Q	S	Q	L	H	Q	Q	D	R	K	W	P	R	L	P	D	Y	F	A	I	G	R	T
Query Conservation																																																.	.
Alig confidence																																																.	.																.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		L	G	A	Q	K	A	A	D	E	A	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A	E	D	L	T	P	S	V	A	Q	Y	R	A	.	.	.	.	.	.	R	N	I	P	V	L	V	V	D	S	D
Template Known Secondary structure												T									S	S	T	T																S			S							S	S	T	T	T	T										.	.	.	.	.	.	T	T							S	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																							.	.															.	.	.	.	.	.	.
Query SS confidence																																							.	.															.	.	.	.	.	.	.
Query Sequence		T	A	L	A	L	H	T	V	S	G	Q	K	I	L	Y	P	Q	D	R	E	I	S	E	V	L	L	Q	L	P	E	L	Q	N	I	A	G	K	.	.	R	A	L	I	L	R	G	N	G	G	R	E	L	I	.	.	.	.	.	.	.	G	D	T	L	T	A	R	G	A	E	V	T	F	C	E	C	Y	Q	R	C
Query Conservation																																							.	.															.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																		.	.															.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	L	A	G	D	A	H	Q	G	L	V	A	T	D	N	Y	A	A	G	Q	L	A	A	R	A	L	L	A	T	L	D	L	S	K	E	R	N	I	A	L	L	R	L	R	A	G	N	A	S	T	D	Q	R	E	Q	G	F	L	D	V	L	R	K	H	D	K	I	R	I	I	A	A	P	Y	A	G	D
Template Known Secondary structure		.	.	.	.		S	S	S		S	S																						S		T	T	S								B			T	T																T	T		T	T								B			S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																							.
Query SS confidence																		.																																							.
Query Sequence		A	I	H	Y	D	G	A	E	E	A	M	R	W	Q	A	R	.	E	V	T	M	V	V	V	T	S	G	E	M	L	Q	Q	L	W	S	L	I	P	Q	W	Y	R	E	H	W	L	L	H	C	R	L	L	V	V	S	.	E	R	L	A	K	L	A	R	E	L	G	W	Q	D	I	K	V	A	D	N	A	D	N	D
Query Conservation																		.																																							.
Alig confidence																		.																												.	.	.									.
Template Conservation																																														.	.	.
Template Sequence		D	R	G	A	A	R	S	E	X	L	R	L	L	K	E	T	P	T	I	D	G	L	F	T	P	N	E	S	T	T	I	G	A	L	V	A	I	R	Q	S	G	X	S	K	.	.	.	Q	F	G	F	I	G	F	D	Q	T	E	E	L	E	A	A	X	Y	A	G	E	I	S	N	L	V	V	Q	N	P	E	Y	X
Template Known Secondary structure		S																S									S														T	T		T	T	.	.	.	S	S						S											T	T	S	S	S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	L	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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