Job Description P09126 Confidence 34.29% Date Thu Jan 5 11:01:52 GMT 2012 Rank 168 Aligned Residues 185 % Identity 10% Template c3g85A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum Resolution 1.84 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	L	V	S	R	L	R	T	L	G	Q	V	A	W	H	F	P	L	I	E	F	S	P	G	Q	Q	L	P	Q	L	A	D	Q	L	A	A	L	G	E	S	D	L	L	F	A	L	S	Q	H	A	V	A	F	A	Q	S	Q	L	H	Q	Q	D	R	K	W	P	R	L	P	D	Y	F	A	I	G	R	T	T	A
Query Conservation
Alig confidence																				.	.	.																																									.	.	.	.	.	.										.	.	.	.
Template Conservation																				.	.	.																																									.	.	.	.	.	.										.	.	.	.
Template Sequence		R	G	L	Q	S	K	L	A	K	Q	N	Y	N	Y	N	V	V	I	.	.	.	C	P	Y	K	T	D	C	L	H	L	E	K	G	I	S	K	E	N	S	F	D	A	A	I	I	A	N	I	S	N	Y	D	L	E	Y	L	N	K	A	S	.	.	.	.	.	.	L	T	L	P	I	I	L	F	N	.	.	.	.
Template Known Secondary structure											T	T	T		S					.	.	.					T	T		G	G	G		G	G	G	S	T	T	T			S					S	S														.	.	.	.	.	.		S	S						S	.	.	.	.
Template Predicted Secondary structure																				.	.	.																																									.	.	.	.	.	.										.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.							.	.	.	.	.	.	150	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		L	A	L	H	T	V	S	G	Q	K	I	L	Y	P	Q	D	R	E	I	S	E	V	L	L	Q	L	P	E	L	Q	N	I	A	G	K	R	A	L	I	L	R	G	N	G	G	.	.	.	.	.	.	R	E	L	I	G	D	T	L	T	A	R	G	A	E	V	T	F	C	E	C	Y	Q	R	C	A	I	H	Y	D
Query Conservation																																															.	.	.	.	.	.
Alig confidence		.	.	.	.																																										.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	L	S	N	K	Y	S	S	V	N	V	D	N	Y	K	X	G	E	K	A	S	L	L	F	A	K	K	R	Y	K	S	A	A	A	I	L	T	E	S	L	N	D	A	X	D	N	R	N	K	G	F	I	E	T	C	H	K	N	G	I	K	I	S	E	N	H	I	I	A	A	E	N	S	I	H	G
Template Known Secondary structure		.	.	.	.				S	S	S																					T	T			B									S	S																	T	T		B			G	G	G						S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		G	A	E	E	A	M	R	W	Q	A	R	E	.	.	V	T	M	V	V	V	T	S	G	E	M	L	Q	Q	L	W	S	L	I	P	Q	W	Y	R	E	H	W	L	L	H	C	R	L	L	V	V	S
Query Conservation														.	.
Alig confidence														.	.																											.
Template Conservation																																										.
Template Sequence		G	V	D	A	A	K	K	L	X	K	L	K	N	T	P	K	A	L	F	C	N	S	D	S	I	A	L	G	V	I	S	V	L	N	K	R	Q	I	S	I	.	P	D	D	I	E	I	V	A	I	G
Template Known Secondary structure										T	T	S	S	S			S					S	S														T	T			T	.	T	T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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