Job Description P09126 Confidence 60.83% Date Thu Jan 5 11:01:52 GMT 2012 Rank 82 Aligned Residues 180 % Identity 8% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	L	V	S	R	L	R	T	L	G	Q	V	A	W	H	F	P	L	I	E	F	S	P	G	Q	Q	L	P	Q	L	A	D	Q	L	A	A	L	G	E	S	D	L	L	F	A	L	S	Q	H	A	V	A	F	A	Q	S	Q	L	H	Q	Q	D	R	K	W	P	R	L	P	D	Y	F	A	I	G	R	T	T	A
Query Conservation
Alig confidence																				.	.	.	.	.	.	.													.																								.	.	.	.	.	.												.	.
Template Conservation																				.	.	.	.	.	.	.													.																								.	.	.	.	.	.												.	.
Template Sequence		D	G	I	Q	E	E	A	H	K	N	G	Y	N	L	I	I	V	Y	.	.	.	.	.	.	.	E	E	Q	K	H	A	L	L	T	A	I	E	.	R	P	V	X	G	I	L	L	L	S	I	A	L	T	D	D	N	L	Q	L	L	Q	S	.	.	.	.	.	.	S	D	V	P	Y	C	F	L	S	X	G	.	.
Template Known Secondary structure									T	T	T	T								.	.	.	.	.	.	.													.	S			S						S														.	.	.	.	.	.	T	T							S			.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.													.																								.	.	.	.	.	.												.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.
Query Sequence		L	A	L	H	T	V	S	G	Q	K	I	L	Y	P	Q	D	R	E	I	S	E	V	L	L	Q	L	P	E	L	Q	N	I	A	G	K	R	A	L	I	L	R	G	N	G	.	.	.	.	.	.	.	G	R	E	L	I	G	D	T	L	T	A	R	G	A	E	V	T	F	C	E	C	Y	Q	R	C	A	I	H	Y
Query Conservation																																														.	.	.	.	.	.	.
Alig confidence		.	.	.	.																													.	.											.	.	.	.	.	.	.
Template Conservation		.	.	.	.																													.	.
Template Sequence		.	.	.	.	F	D	D	D	R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	E	G	H	.	.	R	Q	I	G	I	A	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I	K	P	G	D	Y	S	Y	T
Template Known Secondary structure		.	.	.	.		S	S	S																					T	T	T		.	.		S					S				S	S																	T	T					G	G	G						S	S
Template Predicted Secondary structure		.	.	.	.																													.	.
Template SS confidence
						151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		166	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		D	G	A	E	E	A	M	R	W	.	Q	A	R	E	V	T	M	V	V	V	T	S	G	E	M	L	Q	Q	L	W	S	L	I	P	Q	W	Y	R	E	H	W	L	L	H	C	R	L	L	V	V	S
Query Conservation											.
Alig confidence											.																															.
Template Conservation																																										.
Template Sequence		S	G	E	Q	A	X	K	A	F	G	K	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	.	P	K	D	L	S	I	V	S	I	D
Template Known Secondary structure												T	T				S					S	S														T	T			T	.	T	T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions