 |
Job Description | P09126 | Confidence | 57.66% | Date | Thu Jan 5 11:01:52 GMT 2012 |
Rank | 93 | Aligned Residues | 107 |
% Identity | 17% | Template | c3a0rB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:response regulator; |
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
|
Resolution | 3.80 Å |
|
 |
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | |
. | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | |
|
|
. | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | R | A | L | I | L | R | G | N | G | G | R | . |
E | L | I | G | D | T | L | T | A | R | G | A | E | V | T | F | C | E | C | Y | Q | R | C | A | I | H | Y | D | G | A | E | E | A | M | R | W | Q | A | R | E | V | T | M | V | V | V | . |
. |
. |
T | S | G | E | M | L | Q | Q | L | W | S | L | I | P | Q | W | Y |
Query Conservation |   |
  |   |   |
|
|   |   |   |
|   |   |   |   | . |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |
| . | . | . |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
X | K | R | I | L | V | V | D | D | E | P | N | I | R | E | L | L | K | E | E | L | Q | E | E | G | Y | E | I | D | T | A | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
N | G | E | E | A | L | K | K | F | F | S | G | N | Y | D | L | V | I | L | D | I | E | X | P | G | I | S | G | L | E | V | A | G | E | I | R | K | K | K |
Template Known Secondary structure |   |
|
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  | T | S |
|
| S |
|  |  |  |
| S | S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
. | . | . | 240 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | E | H | W | L | L | H | C | R | L | L | V | V | S | E | R | L | A | K | L | A | R | E | L | G | W | Q | D | I | K | V | A | D | N | A | . |
D | N | D | A | L | L | R | A | L | Q |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |
| . |   |   |   |   |
|
|   |
|
|   |
Alig confidence |   |
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . | . | . | . |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |
Template Sequence |   |
K | . |
. |
. |
. |
. |
D | A | K | I | I | L | L | T | A | Y | S | H | Y | R | S | D | X | S | S | W | A | A | D | E | Y | V | V | K | S | F | N | F | D | E | L | K | E | K | V | K |
Template Known Secondary structure |   |
T | . | . | . | . | . | T |
|
|  |  |  |
|
| S | S |
| S | S |
|
| S | G | G | G | G | T | S |
|  |  |
|
|
| S | S |
|
| T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
| . | . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | |
|
|
|
|
. | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|