Job Description P09126 Confidence 54.53% Date Thu Jan 5 11:01:52 GMT 2012 Rank 100 Aligned Residues 214 % Identity 8% Template c2rjoA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans Resolution 2.05 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																								.	.									.	.	.	.
Query SS confidence																																								.	.									.	.	.	.
Query Sequence		E	E	L	V	S	R	L	R	T	L	G	Q	V	A	W	H	F	P	L	I	E	F	S	P	G	Q	Q	L	P	Q	L	A	D	Q	L	A	A	L	.	.	G	E	S	D	L	L	F	A	.	.	.	.	L	S	Q	H	A	V	A	F	A	Q	S	Q	L	H	Q	Q	D	R	K	W	P	R	L	P	D	Y	F	A
Query Conservation																																								.	.									.	.	.	.
Alig confidence																					.	.	.	.	.															.	.									.	.	.	.																.	.	.	.	.	.
Template Conservation																					.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		K	G	A	Q	S	F	A	K	S	V	G	L	P	Y	V	P	L	T	T	.	.	.	.	.	E	G	S	S	E	K	G	I	A	D	I	R	A	L	L	Q	K	T	G	G	N	L	V	L	N	V	D	P	N	D	S	A	D	A	R	V	I	V	E	A	C	S	K	.	.	.	.	.	.	A	G	A	Y	V	T	T
Template Known Secondary structure												T									.	.	.	.	.	T	T																T	T	T									S	S														.	.	.	.	.	.		T
Template Predicted Secondary structure																					.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																															.	.	.	.	.	.	.
Query SS confidence												.	.	.																																															.	.	.	.	.	.	.
Query Sequence		I	G	R	T	T	A	L	A	L	H	.	.	.	T	V	S	G	Q	K	I	L	Y	P	Q	D	R	E	I	S	E	V	L	L	Q	L	P	E	L	Q	N	I	A	G	K	R	A	L	I	L	R	G	N	G	G	R	E	L	I	G	.	.	.	.	.	.	.	D	T	L	T	A	R	G	A	E	V	T	F	C	E
Query Conservation												.	.	.																																															.	.	.	.	.	.	.
Alig confidence												.	.	.																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	W	N	K	P	K	D	L	H	P	W	D	Y	N	P	N	Y	V	A	H	L	S	Y	D	G	V	A	Y	G	E	E	T	A	T	Q	L	F	K	S	X	G	G	K	G	G	V	V	A	L	G	G	I	F	S	N	V	P	A	I	E	R	K	A	G	L	D	A	A	L	K	K	F	P	G	I	Q	L	L	D	F
Template Known Secondary structure			S				T	T			G	G	G	G	T	T	T																								T	T	T											T	T																	T		T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																						.	.																																							.
Query SS confidence																						.	.																																							.
Query Sequence		C	Y	Q	R	C	A	I	H	Y	D	G	A	E	E	A	M	R	W	Q	A	.	.	R	E	V	T	M	V	V	V	T	S	G	E	M	L	Q	Q	L	W	S	L	I	P	Q	W	Y	R	E	H	W	L	L	H	C	R	L	L	V	V	.	S	E	R	L	A	K	L	A	R	E	L	G	W	Q	D	I	K	V	A
Query Conservation																						.	.																																							.
Alig confidence																						.	.																													.	.	.								.
Template Conservation																																																				.	.	.
Template Sequence		Q	V	A	D	W	N	S	Q	K	A	F	P	I	X	Q	A	W	X	T	R	F	N	S	K	I	K	G	V	W	A	A	N	D	D	X	A	L	G	A	I	E	A	L	R	A	E	G	L	A	G	.	.	.	Q	I	P	V	T	G	X	D	G	T	Q	P	G	L	V	A	I	K	S	G	E	L	V	A	S	V	D
Template Known Secondary structure					T	T																	G	G	G							S	S														T	T		B	T	.	.	.	T	B					S	B											T	T	S			B
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		234	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	A	D	N	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	D	P	F	W	L	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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