Return to main results Retrieve Phyre Job Id

Job DescriptionP15877
Confidence20.40%DateThu Jan 5 11:34:57 GMT 2012
Rank131Aligned Residues200
% Identity11%Templatec3soqA_
PDB info PDB header:protein binding/antagonistChain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   444.....450.........460......... 470.........480.........490.........500.........510.........520..
Predicted Secondary structure 
















.



























Query SS confidence 

























.




















































Query Sequence  LALNATTGKLAWSYQTVHHDLWDMDL. PAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAK
Query Conservation 



  

   
  
    
 

 
 .   
 
 
   

     
    
 
  




 

  
    
  

     
Alig confidence 












.











.







































.............
Template Conservation 
  
     

  .
     
                     
  



     

        
  .............
Template Sequence  VDFVFSHGLIYWS. DVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEV. . . . . . . . . . . . .
Template Known Secondary structure  GGGT.TTTTTTSTT




S


TTTTTTTT.............
Template Predicted Secondary structure 



.






















.............
Template SS confidence 















































































   56...60........ .70.........80.........90.........100.........110.........120.
 
   523......530.........540.........550.........560.........570.........580.........590.........600..
Predicted Secondary structure 
































































Query SS confidence 















































































Query Sequence  GDYVTPTQPFSELSFRPTKDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNRE
Query Conservation 

    


    
          
 
  
  
              
  


        

  

 

   
 

   
Alig confidence  ...................................................




























Template Conservation  ...................................................    
             
  
 

    
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SNLDGSLRKVLFWQELDQPRAIALDPSSG
Template Known Secondary structure  ...................................................TTS
S

SS
SSTTTT
Template Predicted Secondary structure  ...................................................












Template SS confidence 















































































   122.......130.........140.........150
 
   603......610.........620.........630.........640.........650.........660.........670.........680..
Predicted Secondary structure 




























































Query SS confidence 















































































Query Sequence  VAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
Query Conservation    

          
                            
 

           
 
   

 
 
 


  



Alig confidence 


































..................................










Template Conservation   
                       
       
 .................................. 
  
     
Template Sequence  FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLTLDYEEQKL
Template Known Secondary structure 
SSS
TTS
S

SS
S
..................................TTTT
Template Predicted Secondary structure 

















..................................



Template SS confidence 















































































   151........160.........170.........180..... ....190......
 
   683......690.........700.........710.........720.........730.........740..
Predicted Secondary structure 






































Query SS confidence 



























































Query Sequence  VWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGE
Query Conservation   
  
 
      
           
 
  

 
 






  

 

 


 

 


Alig confidence 



























































Template Conservation 
  
     
     

     
       
  


    

  
     
    
    
Template Sequence  YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE
Template Known Secondary structure  TTTTTTS
S

S

S
TTTTTTTTT

Template Predicted Secondary structure 

























Template SS confidence 



























































   197..200.........210.........220.........230.........240.........250......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions