Job Description P15877 Confidence 90.22% Date Thu Jan 5 11:34:57 GMT 2012 Rank 56 Aligned Residues 76 % Identity 13% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.						.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		A	G	N	V	L	F	I	A	A	T	A	D	N	Y	L	R	A	Y	N	M	S	N	G	E	K	L	W	Q	G	R	L	P	A	G	G	Q	A	T	P	M	T	Y	E	V	N	G	K	Q	Y	V	V	I	S	A	G	.	.	.	.	.	G	H	G	S	F	G	T	K	M	G	D	Y	I	V	A	Y	A	L	P	D
Query Conservation																																																									.	.	.	.	.
Alig confidence																																								.								.									.	.	.	.	.
Template Conservation																																								.								.
Template Sequence		P	V	H	G	T	L	A	T	V	G	S	D	G	R	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q	P	I	S	A	.	C	C	F	N	H	N	G	.	N	I	F	A	Y	A	S	S	Y	D	W	S	K	G	H	E	F	Y	N	P	Q	K	K	N	Y	I	F	L	R	N	A	A	E
Template Known Secondary structure		T	T	T								T	T	S							T	T	T	T										S	S					.					T	T	S	.	S										S	T	T		G	G	G			T	T	S										T	T
Template Predicted Secondary structure																																								.								.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		794	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	K
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		361	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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