Job Description P15877 Confidence 57.91% Date Thu Jan 5 11:34:57 GMT 2012 Rank 79 Aligned Residues 241 % Identity 11% Template c3lrvA_ PDB info PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. Resolution 2.60 Å

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	Y	L	C	T	A	H	Q	R	L	F	A	L	D	A	A	S	G	K	E	K	W	H	Y	D	P	E	L	K	T	N	E	S	F	Q	H	V	T	C	R	G	V	S	Y	H	E	A	K	A	E	T	A	S	P	E	V	M	A	D	C	P	R	R	I	I	L	P	V	N	D	G	R	L	I	A	I	N	A	E
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	M	C	R	C	E	D	G	A	L	H	F	T	Q	L	K	D	S	K	T	I	T	T	I	T	T	P	N	P	R	T	G	G	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	I	I	S	R	G	P	C	N	R	L	L	L	L	Y	P	G	N	Q	I	T	I	L	D	S	K
Template Known Secondary structure									T	T								S	S	S	S												T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						S	T	T							T	T	T							T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	L	C	E	T	F	A	N	K	G	V	L	N	L	Q	S	N	M	P	D	T	K	P	G	L	Y	E	P	T	S	P	P	I	I	T	D	K	T	I	V	M	A	G	S	V	T	D	N	F	S	T	R	E	T	S	G	V	I	R	G	F	D	V	N	T	G	E	L	L	W	A	F	D	P	G	A	K	D
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.													.	.	.										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.													.	.	.										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		T	N	K	V	L	R	E	I	E	V	D	.	.	.	.	.	.	.	.	.	.	.	S	A	N	E	I	I	Y	M	Y	G	H	N	.	.	.	T	E	Y	F	I	W	A	D	N	.	.	.	.	.	.	.	.	.	.	R	G	T	I	G	F	Q	S	Y	E	D	D	S	Q	Y	I	V	H	S	.	.	.	.	.
Template Known Secondary structure		T											.	.	.	.	.	.	.	.	.	.	.		S	S										.	.	.									T	.	.	.	.	.	.	.	.	.	.	T								S	S	S	S								.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.													.	.	.										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.												.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.											.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.						.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.																				.
Query SS confidence																																													.	.	.	.	.																				.
Query Sequence		P	N	A	I	P	S	D	E	H	T	F	T	F	N	S	P	N	S	W	A	P	A	A	Y	D	A	K	L	D	L	V	Y	L	P	M	G	V	T	T	P	D	I	W	.	.	.	.	.	G	G	N	R	T	P	E	Q	E	R	Y	A	S	S	I	L	A	L	N	.	A	T	T	G	K	L	A	W	S	Y	Q	T
Query Conservation																																													.	.	.	.	.																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	K	S	D	V	E	Y	S	S	G	V	L	H	K	D	S	L	L	L	A	L	Y	S	P	D	G	I	L	D	V	Y	N	L	S	S	P	D	Q	A	S	S	R	F	P	V	D	E	E	A	K	I	K	E	V	K	F	A	D	N	G	Y	W	M	V	V	E	C	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.			S	S										T	T	S								T	T	S							S	S		T	T	S									T	T	S									T	T	S	S							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.									.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.
Query Sequence		V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	.	.	.	.	.	.	.	.	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L	D	R	R	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G	A	A	K	G	D
Query Conservation																	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	V	V	C	F	D	L	R	K	D	V	G	T	L	A	Y	P	T	Y	T	I	G	T	V	T	Y	D	I	D	D	S	G	K	N	M	I	A	Y	S	N	E	S	N	S	L	T	I	Y	K	F	D	K	K	T	K	N	W	T	K	D	E	E	S	A	L	C	L	A	D	F	T	D
Template Known Secondary structure		S	B						T	T	S	S	T	T		B	S	S				B										T	T	S	S							T	T	T	T									T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions