Phyre 2 alignment of P15877 with c3fw0A

Job Description P15877
Confidence 90.69% Date Thu Jan 5 11:34:57 GMT 2012

Rank 55 Aligned Residues 293

% Identity 15% Template c3fw0A_

PDB info PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate)

Resolution 2.52 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.							.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence	A	P	A	A	Y	D	A	K	L	D	L	V	Y	L	P	M	G	V	.	.	.	.	.	.	T	T	P	D	I	W	G	G	N	R	T	P	E	Q	E	R	Y	A	S	S	I	L	A	L	N	A	T	T	G	K	L	A	W	S	Y	Q	T	V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	L	A	D	I
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.
Template Sequence	S	G	V	A	L	D	S	K	N	N	L	V	I	F	H	R	G	D	H	V	W	D	G	N	S	F	D	S	K	F	V	Y	Q	Q	R	G	L	G	P	I	E	E	D	T	I	L	V	I	D	P	N	N	A	E	I	L	Q	S	S	G	K	N	L	F	.	.	.	.	.	.	.	.	Y	L	P	H	G	L	S	I
Template Known Secondary structure							T	T									T	T					T	T	T	B		T	T			B	S		G	G	G		S			S								T	T	T									T	T	T		.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Template SS confidence
	518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.									.	.	.	.	.	.	.	.

	479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L	D	R	R	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G	A	A	K	G	D	Y	V	T	P	T	Q	P	F	S	E	L	S	F	R	P	T	K	D	L	S	G	A	D	M	W	G	A	T	M	F	D	Q	L	V
Query Conservation
Alig confidence							.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	T	D	G	N	Y	.	.	.	W	V	T	D	V	A	L	H	Q	V	F	K	L	D	P	H	S	K	E	G	P	L	L	I	L	G	R	S	M	Q	P	G	S	D	Q	N	H	F	C	Q	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T				.	.	.					T	T	T	T							T	T		S	S			S						T	T				S	S	T	T			S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	590	.	.	.	.	.				.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.

	559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	R	V	M	F	H	Q	M	R	Y	E	G	I	F	T	P	P	S	E	Q	G	T	L	V	F	P	G	N	L	G	M	F	E	W	G	G	I	S	V	D	P	N	R	E	V	A	I	A	N	P	M	A	L	P	F	V	S	K	L	I	P	R	G	P	G	N	P	M	E	Q	P	K	D	A	K	G	T	G	T	E
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	V	E	P	S	T	G	A	V	F	V	S	D	G	Y	C	N	S	R	I	V	Q	F	S	P	S	G	K	F	V	T	Q	W	G	E	E	S	S	G	S	S	P	R
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T									S	S									T	T													S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																				638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.

	639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	I	Q	P	Q	Y	G	V	P	Y	G	V	T	L	N	P	F	L	S	P	F	G	L	P	C	K	Q	P	A	W	G	Y	I	S	A	L	D	L	K	T	N	E	V	V	W	K	K	R	I	G	T	P	Q	D	S	M	P	F	P	M	P	V	P	V	P	F	N	M	G	M	P	M	L	G	G	P	I	S	T
Query Conservation
Alig confidence			.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	G	.	.	.	Q	F	S	V	P	H	S	L	A	L	V	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	Q	L	C	V	A	D	R	E	N	G	R	I	Q	C	F	K	T	D	T	K	E	F	V	R	E	I	K	H	A	S	F	G	R	N	V	F	A	I	S	Y	I	P	G	F	L	F	A
Template Known Secondary structure	T	T	.	.	.			S	S								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							G	G	G	T							T	T	T										G	G	G	T	T									T	T
Template Predicted Secondary structure			.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	683	.				.	.	.	.	.	690	.	.	.	.	.	.	.														.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.

	719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	N	V	L	F	I	A	A	T	A	D	N	Y	L	R	A	Y	N	M	S	N	G	E	K	L	W	Q	G	R	L	P	A	G	G	Q	A	T	P	M	T	Y	E	V	N	G	K	Q	Y	V	V	I	S	A	G	G	H	G	S	F	G	T	K	M	G	D	Y	I	V	A	Y	A	L	P	D	D	V	K
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence	V	N	G	K	P	Y	F	G	D	Q	E	P	V	Q	G	F	V	M	N	F	S	S	G	E	I	I	D	V	F	K	P	V	R	K	H	F	D	M	P	H	D	I	V	A	S	E	D	G	T	V	Y	I	G	D	A	H	T	N	T	.	.	.	.	.	.	.	.	V	W	K	F	T	L	T	E	K	M	E
Template Known Secondary structure							T	T		S										T	T	T										S	S	S			S	S								T	T	S							S	S	S			.	.	.	.	.	.	.	.										S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
	747	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.									.	.	.	.	810	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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