Phyre 2 alignment of P15877 with c3ei4D

Job Description P15877
Confidence 78.73% Date Thu Jan 5 11:34:57 GMT 2012

Rank 67 Aligned Residues 273

% Identity 12% Template c3ei4D_

PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex

Resolution 3.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	441	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence	S	S	I	L	A	L	N	A	T	T	G	K	L	.	A	W	S	Y	Q	T	V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L	D	R	R	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence	P	S	T	V	A	V	G	S	K	G	G	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S	S	M	E	G	T	T	R	L	Q	D	F	K	G	N	I	L	R	V	F	A	S	S	D	T	I	N	I	W
Template Known Secondary structure	S	S							S	S	S							S	S	S		S									S	S	S								B		T	T		T	T							T	T	S							T	T	T										S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

	520	.	.	.	.	.	.	.	.	.	530	.	.	.				.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure															.	.	.																																																											.	.	.	.	.
Query SS confidence															.	.	.																																																											.	.	.	.	.
Query Sequence	A	A	K	G	D	Y	V	T	P	T	Q	P	F	S	.	.	.	E	L	S	F	R	P	T	K	D	L	S	G	A	D	M	W	G	A	T	M	F	D	Q	L	V	C	R	V	M	F	H	Q	M	R	Y	E	G	I	F	T	P	P	S	E	Q	G	T	L	V	F	P	G	N	L	G	M	F	E	.	.	.	.	.
Query Conservation															.	.	.																																																											.	.	.	.	.
Alig confidence															.	.	.																																																											.	.	.	.	.
Template Conservation
Template Sequence	F	C	S	L	D	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W	N	L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F	L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	V	R	G	K	A	S	F	L	Y
Template Known Secondary structure								T	T	T	T							S	S	S							T	T			B							S	S	S									T	T	S	T	T							T	T	S							T	T	T			S	S	S			S
Template Predicted Secondary structure
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

								592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	W	G	G	I	S	V	D	P	N	R	E	V	A	I	A	N	P	M	A	L	P	F	V	S	K	L	I	P	R	G	P	G	N	P	M	E	Q	P	K	D	A	K	G	T	G	T	E	S	G	I	Q	P	Q	Y	G	V	P	Y	G	V	T	L	N	P	F	L	S	P	F	G	L	P	C
Query Conservation	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	T	T	D	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S									T	T	S	S							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	Q	P	A	W	G	Y	I	S	A	L	D	L	K	T	N	E	V	V	W	K	K	R	I	G	T	P	Q	D	S	M	P	F	P	M	P	V	P	V	P	F	N	M	G	M	P	M	L	G	G	P	I	S	T	A	G	N	V	L	F	I	A	A	T	A	D	N	Y	L	R	A	Y	N	M	S	N	G	E	K	L
Query Conservation
Alig confidence	.	.	.	.	.																																																								.
Template Conservation	.	.	.	.	.																																																								.
Template Sequence	.	.	.	.	.	S	E	I	R	V	Y	S	A	S	Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	.	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K	M	M
Template Known Secondary structure	.	.	.	.	.	S							T	T		S	S	S		S											T	T	S									S	S	S	S										T	T	S			S	.	S	S				S							S	S	S
Template Predicted Secondary structure	.	.	.	.	.																																																								.
Template SS confidence
						310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

	745	.	.	.	.	750	.	.	.	.	.	.	.	.		.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence	W	Q	G	R	L	P	A	G	G	Q	A	T	P	M	.	T	Y	E	V	N	G	K	Q	Y	V	V	I	S	A	G	G
Query Conservation															.
Alig confidence															.							.
Template Conservation																						.
Template Sequence	C	Q	L	Y	D	P	E	S	S	G	I	S	S	L	N	E	F	N	P	M	G	.	D	T	L	A	S	A	M	G	Y
Template Known Secondary structure						T	T	T		S									S	S	S	.	S	S						T	T
Template Predicted Secondary structure																						.
Template SS confidence
	384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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