Job Description P15877 Confidence 27.66% Date Thu Jan 5 11:34:57 GMT 2012 Rank 114 Aligned Residues 286 % Identity 10% Template c3ei3B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex Resolution 2.30 Å

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		441	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		S	S	I	L	A	L	N	A	T	T	G	K	L	A	.	W	S	Y	Q	T	V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L	D	R	R	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G
Query Conservation																.
Alig confidence																.																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		P	T	T	V	A	V	G	S	K	G	G	D	I	I	L	W	D	Y	D	V	Q	N	K	T	S	F	I	Q	G	M	G	P	G	D	A	I	T	G	M	K	F	N	Q	F	N	T	N	Q	L	F	V	S	S	I	R	G	A	T	T	L	R	D	F	S	G	S	V	I	Q	V	F	A	K	T	D	S	W	.	.	.
Template Known Secondary structure		T	T							B	T	S							T	T	S	T	T									S	T	T		B								T	T										T	T	T							T	T	S												S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	K	G	D	Y	V	T	P	T	Q	P	F	S	E	L	S	F	R	P	T	K	D	L	S	G	A	D	M	W	G	A	T	M	F	D	Q	L	V	C	R	V	M	F	H	Q	M	R	Y	E	G	I	F	T	P	P	S	E	Q	G	T	L	V	F	P	G	N	L	G	M	F	E	W	G	G	I	S	V	D	P
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	D	Y	W	Y	C	C	V	D	V	S	V	S	R	Q	M	L	A	T	G	D	S	T	G	R	L	L	L	L	G	L	D	G	H	E	I	F	K	E	K	L	H	K	A	K	V	T	H	A	E	F	N	P	R	C	D	W	L	M	A	T	S	S	V	D	A	T	V	K	L	W	D	L	R	N	I	K
Template Known Secondary structure		.	.	.	.	S										T	T	T	T							T	T	S							T	T	S									S	S	S									S	S		T	T							T	T	S							G	G	G
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	E	V	A	I	A	N	P	M	A	L	P	F	V	S	K	L	I	P	R	G	P	G	N	P	M	E	Q	P	K	D	A	K	G	T	G	T	E	S	G	I	Q	P	Q	Y	G	V	P	Y	G	V	T	L	N	P	F	L	S	P	F	G	L	P	C	K	Q	P	A	W	G	Y	I	S	A	L	D	L	K	T
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	N	S	Y	I	A	E	M	P	H	E	K	P	V	N	A	A	Y	F	N	P	T	D	S	T	K	L	L	T	T	D	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	I	R	V	Y	S	S	Y	D
Template Known Secondary structure		S	T	T									S	S									T	T	T	S								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	B
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.																																					.	.	.	350	.	.	.	.	.	.
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	E	V	V	W	K	K	R	I	G	T	P	Q	D	S	M	P	F	P	M	P	V	P	V	P	F	N	M	G	M	P	M	L	G	G	P	I	S	T	A	G	N	V	L	F	I	A	A	T	A	D	N	Y	L	R	A	Y	N	M	S	N	G	E	K	L	W	Q	G	R	L	P	A	G	G	Q	A	T	P	M	.
Query Conservation																																																																																	.
Alig confidence																								.	.	.	.																																																						.
Template Conservation																								.	.	.	.
Template Sequence		W	S	K	P	D	Q	I	I	I	H	P	H	R	Q	F	Q	H	L	T	P	I	K	.	.	.	.	A	T	W	H	P	M	Y	D	L	I	V	A	G	R	Y	P	D	D	Q	L	L	L	N	D	K	R	T	I	D	I	Y	D	A	N	S	G	G	L	V	H	Q	L	R	D	P	N	A	A	G	I	I	S	L	N
Template Known Secondary structure		T	T	S		S							B				T	T	S					.	.	.	.					S	S	S	S							B			T	T	T		T	T										T	T	T									B	T	T	B		S
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	E	V	N	G	K	Q	Y	V	V	I	S	A	G	G
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		K	F	S	P	T	G	D	.	V	L	A	S	G	M	G	F
Template Known Secondary structure					T	T	S	S	.							T	T
Template Predicted Secondary structure									.
Template SS confidence
		433	.	.	.	.	.	.		440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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