Job Description P15877 Confidence 79.35% Date Thu Jan 5 11:34:57 GMT 2012 Rank 66 Aligned Residues 284 % Identity 8% Template c3c5mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Resolution 2.60 Å

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		226	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure												.	.													.
Query SS confidence												.	.													.
Query Sequence		T	L	Y	L	C	T	A	H	Q	R	.	.	L	F	A	L	D	A	A	S	G	K	E	K	.	W	H	Y	D	P	E	L	K	T	N	E	S	F	Q	H	V	T	C	R	G	V	S	Y	H	E	A	K	A	E	T	A	S	P	E	V	M	A	D	C	P	R	R	I	I	L	P	V	N	D	G	R	L	I	A	I
Query Conservation												.	.													.
Alig confidence												.	.													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	F	A	G	D	F	D	G	N	R	N	Y	Y	L	L	N	L	E	T	Q	Q	A	V	Q	L	T	E	G	K	G	D	N	T	F	G	G	F	I	S	T	D	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	F	Y	V	K	N	E	L	N	L	X	K	V
Template Known Secondary structure								T	T	S	S								T	T	T	T								S	S		B		T	T	T					T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																							.	.	.	.	.	.	100	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		N	A	E	N	G	K	L	C	E	T	F	A	N	K	G	V	L	N	L	Q	S	N	M	P	D	T	K	P	G	L	Y	E	P	T	S	P	P	I	I	T	D	K	T	I	V	M	A	G	S	V	T	D	N	F	S	T	R	E	T	S	G	V	I	R	G	F	D	V	N	T	G	E	.	L	L	W	A	F	D	P
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		D	L	E	T	L	E	E	Q	V	I	Y	T	V	D	E	E	W	K	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	L	K	R	D	W	Q	P	L	T	S	W	E	K	F	A	E	F	Y	H	T	N	P	T	C	R	L	I	K	V	D	I	E	T	G	E	L	E	V	I	H	Q	D	T
Template Known Secondary structure			T	T	T											T	T											T	T	S	S									G	G	G						S										T											T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.										.	.
Query SS confidence																		.	.	.	.										.	.
Query Sequence		G	A	K	D	P	N	A	I	P	S	D	E	H	T	F	T	.	.	.	.	F	N	S	P	N	S	W	A	P	.	.	A	A	Y	D	A	K	L	D	L	V	Y	L	P	M	G	V	T	T	P	D	I	W	G	G	N	R	T	P	E	Q	E	R	Y	A	S	S	I	L	A	L	N	A	T	T	G	K	L	A	W
Query Conservation																		.	.	.	.										.	.
Alig confidence																		.	.	.	.										.	.
Template Conservation
Template Sequence		A	W	L	G	H	P	I	Y	R	P	F	D	D	S	T	V	G	F	C	H	E	G	P	H	D	L	V	D	A	R	X	W	L	V	N	E	D	G	S	N	V	R	K	I	K	E	H	A	E	G	E	S	C	T	H	E	F	W	I	P	D	G	S	A	X	A	Y	V	S	Y	F	K	G	Q	T	D	R	V	I	Y
Template Known Secondary structure		S									T	T											S		S	S	S		S								T	T	S						S	S				T	T										T	T	S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.				490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		S	Y	Q	T	V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	.	.	.	A	P	A	K	T	G	N	I	F	V	L	D	R	R	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G	A	A	K	G	D	Y	V	T	P	T	Q	P
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		K	A	N	P	E	T	L	E	N	E	E	V	X	V	X	P	P	C	S	H	L	X	S	N	F	D	G	S	L	X	V	G	D	G	C	D	A	N	I	E	N	D	P	F	L	Y	V	L	N	T	K	A	K	S	A	Q	K	L	C	K	H	S	T	S	W	D	V	L	D	G	D	R	Q	I	T	H	P	H	P
Template Known Secondary structure					T	T	T											S								S	S	S	S																						T	T	T	T	B														B	T	T	B	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions