Job Description P15877 Confidence 27.29% Date Thu Jan 5 11:34:57 GMT 2012 Rank 115 Aligned Residues 227 % Identity 15% Template c2zuyA_ PDB info PDB header:lyase Chain: A: PDB Molecule:yesx protein; PDBTitle: crystal structure of exotype rhamnogalacturonan lyase yesx Resolution 1.65 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		T	A	H	Q	R	L	F	A	L	D	A	A	S	G	.	.	K	E	K	W	H	Y	D	P	E	L	K	T	N	E	S	F	Q	H	V	T	C	R	G	V	S	Y	H	E	A	K	A	E	T	A	S	P	E	V	M	A	D	C	P	R	R	I	I	L	P	V	N	D	G	R	L	I	A	I	N	A	E	N	G	K
Query Conservation																.	.
Alig confidence																.	.																																					.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Sequence		Y	T	R	T	V	L	V	A	Y	D	F	R	N	G	R	L	K	K	R	W	V	F	D	S	N	Q	P	G	H	E	A	Y	A	G	Q	G	N	H	S	L	S	V	A	D	V	D	G	D	G	K	D	E	.	.	.	.	.	.	.	.	.	I	I	Y	G	A	.	.	.	.	.	.	M	A	V	D	H	D	G	T
Template Known Secondary structure		S	S	S										T	T										T	T	S	T	T		G	G	G	T	T				S	S							S	S	S	S	S			.	.	.	.	.	.	.	.	.				T	T	.	.	.	.	.	.					T	T	S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.										.	.	.	.	.							350	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.									.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.
Query Sequence		L	C	E	T	F	A	N	K	G	V	L	N	L	Q	S	N	M	P	D	T	K	P	G	L	Y	E	P	T	S	P	P	I	I	T	D	K	T	I	V	M	A	G	S	V	T	D	N	.	.	.	.	.	.	.	.	F	S	T	R	E	T	S	G	V	I	R	G	F	D	V	N	T	G	E	L	L	W	A	F	D
Query Conservation																																																	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	G	L	G	H	G	D	A	M	H	V	G	D	L	D	P	S	R	K	G	L	E	V	F	Q	V	H	E	D	A	T	K	P	Y	G	L	S	L	R	D	A	G	T	G	E	I	L	W	G	V	H
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S					S							S		T	T	S	S	S										T	T	S	S		S						T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		358	.	360																										.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		381	.	.	.										.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.						.	.	.	.	430	.	.	.	.	.	.							.	.	.	440
Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																										.	.	.	.	.												.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.																																										.	.	.	.	.												.	.	.	.	.	.
Query Sequence		P	G	A	K	.	.	.	.	.	.	.	.	.	D	P	N	A	I	P	S	D	E	H	T	F	T	F	N	S	P	N	S	W	A	P	A	A	Y	D	A	K	L	D	L	V	Y	L	P	M	G	V	T	T	P	.	.	.	.	.	D	I	W	G	G	N	R	T	P	E	Q	.	.	.	.	.	.	E	R	Y	A
Query Conservation						.	.	.	.	.	.	.	.	.																																										.	.	.	.	.												.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																																	.	.								.	.	.	.	.												.	.	.	.	.	.
Template Conservation																																															.	.
Template Sequence		A	G	T	D	V	G	R	G	M	A	A	H	I	D	P	S	Y	K	G	S	L	V	W	G	I	D	P	P	G	N	D	G	M	S	Y	G	L	F	T	S	K	G	E	K	I	.	.	S	D	K	A	P	S	S	A	N	F	A	I	W	W	D	G	D	L	V	R	E	L	L	D	H	D	W	D	G	T	I	G	R
Template Known Secondary structure			S	S												T	T	S	S	S									T	T	S										T	T					.	.		S	S			S			S						S	S	S	S	S										S	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.			.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	L	A	L	N	A	T	T	G	K	L	A	W	S	Y	Q	T	V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		P	K	I	E	K	W	D	A	E	N	G	C	L	K	T	I	F	Q	P	A	G	V	L	S	N	N	G	T	K	G	N	P	V	L	Q	A	N	L	F	G	D	W	R	E	.	E	V	I	W	R	T	E	D	S	S	A	L	R	I	Y
Template Known Secondary structure									T	T	T	T									T	T				B	S	G	G	G		B		S						S	S	S	S	S		.							T	T	S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions