Job Description P15877 Confidence 92.22% Date Thu Jan 5 11:34:57 GMT 2012 Rank 52 Aligned Residues 223 % Identity 13% Template c2zuxA_ PDB info PDB header:lyase Chain: A: PDB Molecule:yesw protein; PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose Resolution 1.32 Å

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		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	A	L	D	A	A	S	G	K	E	K	W	H	Y	D	P	E	L	K	T	N	E	S	F	Q	H	V	T	C	R	G	V	S	Y	H	E	A	K	A	E	T	A	S	P	E	V	M	A	D	C	P	R	R	I	I	L	P	V	N	D	G	R	L	I	A	I	N	A	E	N	G	K	L	C	E	T	F	A	N
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.						.	.	.	.	.	.												.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.						.	.	.	.	.	.												.	.	.	.
Template Sequence		A	Y	N	F	R	D	G	K	L	S	K	L	W	T	L	D	S	S	K	S	G	N	E	A	F	A	G	Q	G	N	H	N	L	S	I	A	D	V	D	G	D	G	K	D	E	.	.	.	.	.	.	.	.	.	I	I	F	G	S	.	.	.	.	.	.	M	A	V	D	H	D	G	K	G	M	Y	.	.	.	.
Template Known Secondary structure							T	T										T	T	S	T	T		G	G	G	S	S				S								S	S	S	S	S			.	.	.	.	.	.	.	.	.				T	T	.	.	.	.	.	.					T	T	S					.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.						.	.	.	.	.	.												.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.										.	.	380	.	.							.	.	.	.	.	.	.	390	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.									.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		K	G	V	L	N	L	Q	S	N	M	P	D	T	K	P	G	L	Y	E	P	T	S	P	P	I	I	T	D	K	T	I	V	M	A	G	S	V	T	D	N	.	.	.	.	.	.	.	.	F	S	T	R	E	T	S	G	V	I	R	G	F	D	V	N	T	G	E	L	L	W	A	F	D	P	G	A	K	D	P	N
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	G	L	G	H	G	D	A	L	H	T	G	D	L	D	P	G	R	P	G	L	E	V	F	Q	V	H	E	D	K	N	A	K	Y	G	L	S	F	R	D	A	A	T	G	K	I	L	W	G	V	Y	A	G	K	D	V	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S					S									T	T	S	S	S										T	T	S	S		S						T	T	T										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		A	I	P	S	D	E	H	T	F	T	F	N	S	P	N	S	W	A	P	A	A	Y	D	A	K	L	D	L	V	Y	.	.	L	P	M	G	V	T	T	P	D	I	W	G	G	N	R	T	P	E	Q	E	R	Y	A	S	S	I	L	A	L	N	A	T	T	G	K	L	A	W	S	Y	Q	T	V	H	H	D	L	W
Query Conservation																																.	.
Alig confidence																.																.	.
Template Conservation																.
Template Sequence		G	M	A	A	D	I	D	P	R	Y	P	G	Q	E	.	V	W	A	N	G	S	L	Y	S	A	K	G	V	K	I	G	S	G	V	P	S	S	T	N	F	G	I	W	W	D	G	D	L	L	R	E	Q	L	D	S	N	R	I	D	K	W	D	Y	Q	N	G	V	S	K	N	M	L	T	A	S	G	A	A	A	N
Template Known Secondary structure									T	T	S	S	S			.				T	T					T	T	S		B		S	S				S			S						S	S	S	S	S						T	T							T	T	T	T									T	T				B
Template Predicted Secondary structure																.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	D	L	P	A	Q	P	T	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		N	G	T	K	A	T	P	T	L	Q	A	D	L	L	G	D	W	R	E	E	.	V	V	W	R	T	E	D	S	S	A	L	R	I	Y
Template Known Secondary structure		S	G	G	G		B		S						S	S	S	S	S			.						T	T	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.		.	.	.	.	.	.	.	.	560	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions