Job Description P15877 Confidence 32.51% Date Thu Jan 5 11:34:57 GMT 2012 Rank 102 Aligned Residues 289 % Identity 11% Template c2biwC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase; PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme Resolution 2.39 Å

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		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.													.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	P	I	K	V	G	D	T	L	Y	L	C	T	A	H	Q	R	L	F	A	L	D	A	A	S	G	K	E	K	W	H	Y	D	P	E	L	K	T	N	E	S	F	Q	H	V	T	.	.	.	.	.	.	.	.	.	.	.	.	C	R	G	V	S	Y	H	E	A	K	A	E	T	A	S	P	E	V	M	A	D
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	I	T	Y	W	G	D	R	L	L	A	L	W	E	G	G	Q	P	H	R	L	E	P	S	N	L	A	T	I	G	L	D	D	L	G	G	I	L	A	E	G	Q	P	L	S	A	H	P	R	I	D	P	A	S	T	F	D	G	G	Q	P	C	Y	V	T	F	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S						T	T							T	T	S							T	T	T									T	T	T	T	S		T	T					S									T	T	T	T	T									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		C	P	R	R	I	I	L	P	V	N	D	G	R	L	I	A	I	N	A	E	N	G	K	L	C	E	T	F	A	N	K	G	V	L	N	L	Q	S	N	M	P	D	T	K	P	G	L	Y	E	P	T	S	P	P	I	I	T	D	K	T	I	V	M	A	G	S	V	T	D	N	F	S	T	R	E	T	S	.	.	G
Query Conservation																																																																															.	.
Alig confidence		.	.	.																																																																											.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	I	K	S	S	L	S	S	T	L	T	L	L	E	L	D	P	Q	G	K	L	L	R	Q	K	T	E	T	F	P	G	F	A	F	I	H	D	F	A	I	T	P	H	Y	A	I	F	L	Q	N	N	V	T	L	N	G	L	P	Y	L	F	G	L	R	G	A	G	E	C	V	Q	F	H	P	D	K	P	A
Template Known Secondary structure		.	.	.				S	S											T	T	S												S											S	S																		T	T	S	S		G	G	G	S					T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		364	.	.	.	.	.	370	.	.	.	.	.	.	.																											.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Query Sequence		V	I	R	G	F	D	V	N	T	G	E	L	L	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	P	G	A	K	D	P	N	A	I	P	S	D	E	H	T	F	T	F	N	S	P	N	S	W	A	P	A	A	Y	D	A	K	L	D	L	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		Q	I	I	L	V	P	R	D	G	G	E	I	K	R	I	P	V	Q	A	G	F	V	F	H	H	A	N	A	F	E	E	N	G	K	I	I	L	D	S	I	C	Y	N	S	L	P	Q	V	D	T	D	G	D	F	R	S	T	N	F	D	N	L	D	P	G	Q	L	W	R	F	T	I	D	P	A	A	A	T	V	E
Template Known Secondary structure								T	T	S																							T	T										S							S	S			G	G	G			G	G	G	S												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
										416	.	.	.	420	.	.	.	.	.	.								.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	Y	L	P	M	G	V	T	T	P	D	.	.	.	.	.	.	.	I	W	G	G	N	R	T	P	E	Q	E	R	Y	A	S	S	I	L	A	L	N	A	T	T	G	K	L	A	W	S	Y	Q	T	V	H	H	D	L	W	D	M	D	L	P	A	Q	P	T	L	A	D	I	T	V
Query Conservation		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		K	Q	L	M	V	S	R	C	C	E	F	P	V	V	H	P	Q	Q	V	G	R	P	Y	R	Y	V	Y	M	G	A	A	H	H	S	T	G	N	A	P	L	Q	A	I	L	K	V	D	L	E	S	G	T	E	T	L	R	S	F	A	P	H	G	.	.	.	.	.	.	F	A	G	E	P	I	F	V	P	R	P	G
Template Known Secondary structure								S									G	G	G	T	T	S			S								S	S	S	S	S												T	T	T									T	T	T		.	.	.	.	.	.											T	T
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.							.	.	.	.	.	.	.	430	.	.	.	.
							481	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.	.			.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.												.													.	.
Query SS confidence		.	.	.	.	.												.													.	.
Query Sequence		.	.	.	.	.	N	G	Q	K	V	P	V	I	Y	A	P	.	A	K	T	G	N	I	F	V	L	D	R	R	.	.	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G	A	A	K	G	D	Y	V	T
Query Conservation		.	.	.	.	.												.													.	.
Alig confidence		.	.	.	.	.												.													.	.
Template Conservation
Template Sequence		G	V	A	E	D	D	G	W	L	L	C	L	I	Y	K	A	D	L	H	R	S	E	L	V	I	L	D	A	Q	D	I	T	A	P	A	I	A	T	L	K	L	K	H	H	I	P	Y	P	L	H	G	S	W	A	Q
Template Known Secondary structure				S	T	T											T	T	T	T									T	T		T	T	S			S						S	S				S
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions