Job Description P15877 Confidence 99.98% Date Thu Jan 5 11:34:57 GMT 2012 Rank 10 Aligned Residues 263 % Identity 19% Template c2be1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1; PDBTitle: structure of the compact lumenal domain of yeast ire1 Resolution 2.98 Å

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		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	D	T	L	Y	L	C	T	A	H	Q	R	L	F	A	L	D	A	A	S	G	K	E	K	W	H	Y	D	P	E	L	K	T	N	E	S	F	Q	H	V	T	C	R	G	V	S	Y	H	E	A	K	A	E	T	A	S	P	E	V	M	A	D	C	P	R	R	I	I	L	P	V	N	D	G	R	L	I	A	I
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	D	I	L	I	A	A	D	V	E	G	G	L	H	A	V	D	R	R	N	G	H	I	I	W	S	I	E	P	E	N	F	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	I	Q	E	P	S	R	L	E	T	Y	E	T	L	I	I	E	P	F	G	D	G	N	I	Y	Y	F
Template Known Secondary structure											T	T	S							T	T	T	T								G	G	G	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S		T	T	T	S	S								S	T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	E	N	G	K	L	C	E	T	F	A	N	K	G	V	L	N	L	Q	S	N	M	P	D	T	K	P	G	L	Y	E	P	T	S	P	P	I	I	T	D	K	T	I	V	M	A	G	S	V	T	D	N	F	S	T	R	E	T	S	G	V	I	R	G	F	D	V	N	T	G	E	L	L	W	A	F	D	P	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	H	Q	G	L	Q	K	L	P	L	S	I	R	Q	L	V	S	.	.	.	.	.	.	.	.	.	.	.	.	T	S	P	L	H	L	K	T	N	E	D	E	K	V	Y	T	G	S	M	.	.	.	.	.	.	.	.	.	.	R	T	I	M	Y	T	I	N	M	L	N	G	E	I	I	S	A	F	G	P	G
Template Known Secondary structure			T	T	T														T	.	.	.	.	.	.	.	.	.	.	.	.	T		S																	.	.	.	.	.	.	.	.	.	.									T	T	T								S	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200													.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.											220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.						.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.						.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																			.	.	.	.	.																												.	.	.	.	.
Query SS confidence																																			.	.	.	.	.																												.	.	.	.	.
Query Sequence		A	K	D	P	N	A	I	P	S	D	E	H	T	F	T	F	N	S	P	N	S	W	A	P	A	A	Y	D	A	K	L	D	L	.	.	.	.	.	V	Y	L	P	M	G	V	T	T	P	D	I	W	G	G	N	R	T	P	E	Q	E	R	Y	A	S	S	.	.	.	.	.	I	L	A	L	N	A	T	T	G	K
Query Conservation																																			.	.	.	.	.																												.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.														.	.	.	.	.																												.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		S	K	N	G	E	N	M	I	V	I	G	K	T	.	.	.	.	.	.	.	I	F	E	L	G	I	H	S	Y	D	G	A	S	Y	N	V	T	Y	S	T	W	Q	Q	N	V	L	D	V	P	L	A	L	Q	N	T	F	S	K	D	G	M	C	I	A	P	F	R	D	K	S	L	L	A	S	D	L	D	F	R	I
Template Known Secondary structure			B												.	.	.	.	.	.	.									T	T	S														T	T	T					T	T		S	S		S	S	S							T	T	T							S	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		453	.	.	.	.	.	.	460	.	.				.	.	.	.	.	.	.	470	.		.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.										.																																																	.
Query SS confidence												.	.	.										.																																																	.
Query Sequence		L	A	W	S	Y	Q	T	V	H	H	.	.	.	D	L	W	D	M	D	L	P	A	.	Q	P	T	L	A	D	I	T	V	N	G	Q	K	V	P	V	I	Y	A	P	A	K	T	G	N	I	F	V	L	D	R	R	N	G	E	L	V	V	P	A	P	E	K	P	V	P	Q	G	.	A	A	K	G	D	Y	V	T
Query Conservation												.	.	.										.																																																	.
Alig confidence												.	.	.										.																																		.	.	.	.												.
Template Conservation																																																										.	.	.	.
Template Sequence		A	R	W	V	S	P	T	F	P	G	I	I	V	G	L	F	D	V	F	N	D	L	R	T	N	E	N	I	L	V	P	H	P	F	N	P	N	K	V	Y	L	D	Q	T	S	N	L	S	W	F	A	L	S	S	Q	N	.	.	.	.	F	P	S	L	V	E	S	A	P	I	S	R	Y	A	S	S	D	R	W	R
Template Known Secondary structure										S	S												T	T	T	T																				T	T								T	T	T	.	.	.	.							T	S		B							G	G	G	S
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		528	.	530	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	Q	P	F	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	S	I	F	E	D
Template Known Secondary structure		S	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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