Job Description P71242 Confidence 98.90% Date Thu Jan 5 12:12:37 GMT 2012 Rank 11 Aligned Residues 359 % Identity 11% Template c3oy2A_ PDB info PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	L	I	L	G	N	H	T	C	G	N	R	G	D	S	A	I	L	R	G	L	L	D	A	I	N	I	L	N	P	H	A	E	V	D	V	M	S	R	Y	P	V	S	S	S	W	L	L	N	R	P	V	M	G	D	P	L	F	L	Q	M	K	Q	H	N	S	A	A	G	V	V	G	R	V	K	K	V	L
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		M	K	L	I	I	V	G	A	H	S	S	V	P	S	G	Y	G	R	V	M	R	A	I	V	P	R	I	S	K	.	.	.	A	H	E	V	I	V	F	G	I	H	A	F	G	R	S	V	H	A	N	I	E	E	F	D	A	Q	T	A	E	H	V	R	G	L	N	E	Q	G	F	Y	Y	S	G	L	S	E	F	I
Template Known Secondary structure											T	T			S														T	T	.	.	.	T	S								S			S			S		S	S	S												T	T			S	T	T
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	R	Y	Q	H	Q	V	L	L	S	R	V	T	D	T	G	K	L	R	N	I	A	I	A	Q	G	F	T	D	F	V	R	L	L	S	G	Y	D	A	I	I	Q	V	G	G	S	F	F	V	D	L	Y	G	V	P	Q	F	E	H	A	L	C	T	F	M	A	K	K	P	L	F	M	I	G	H	S	V	G	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Sequence		D	V	H	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	M	I	Y	N	D	.	.	.	.	.	.	.	P	I	V	I	G	N	Y	L	L	A	M	G	K	C	S	H	R	T	K	I	V	L	Y	V	D	L	V
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								.	.	.	.	.	.	.											G	G	G			S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.																																		.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	D	E	Q	F	N	Q	L	A	N	Y	V	F	G	H	C	D	A	L	I	L	R	E	S	V	S	F	D	L	M	K	R	S	N	I	T	T	A	K	V	E	H	G	V	D	T	A	W	L	V	D	H	H	T	E	D	F	T	A	S	Y	A	V	Q	H	W	L	D	V	A	A	Q	Q	K	T	V	A	I	T
Query Conservation
Alig confidence																																							.																								.	.	.	.	.	.
Template Conservation																																							.																								.	.	.	.	.	.
Template Sequence		S	K	N	I	R	E	N	L	W	W	I	F	S	H	P	K	V	V	G	V	M	A	M	S	K	C	W	I	S	D	I	C	N	Y	G	C	K	.	V	P	I	N	I	V	S	H	F	V	D	T	K	T	I	Y	D	A	R	K	L	V	G	.	.	.	.	.	.	L	S	E	Y	N	D	D	V	L	F	L	N	M
Template Known Secondary structure		S	B	S			G	G	G	G	G	G	G	G		T	T							S	S	T									T	T			.	S															T	T					T	T	.	.	.	.	.	.		G	G	G	T	T	S
Template Predicted Secondary structure																																							.																								.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.							.	.	310	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence		L	R	E	L	A	P	F	D	K	R	L	G	T	T	Q	Q	A	Y	E	K	A	F	A	G	V	V	N	R	I	L	D	E	G	Y	Q	V	I	A	L	S	T	C	T	G	I	D	S	Y	N	K	D	D	R	M	V	A	L	N	L	R	Q	H	I	S	D	P	A	.	.	.	.	.	.	R	Y	H	V	V	M	D
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	.	.	.	.	.	.	.	.	.	.	N	T	A	R	K	R	L	D	I	Y	V	L	A	A	A	R	F	I	S	K	Y	P	D	A	K	V	R	F	L	C	N	S	H	H	E	S	K	F	D	L	H	S	I	A	L	R	E	L	V	A	S	G	V	D	N	V	F	T	H	L	N	K	I	M	I	N	R	T
Template Known Secondary structure		S		.	.	.	.	.	.	.	.	.	.	S	S	G	G	G	T																T	T											T	T		S															T		S							T	T						S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.											.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.						.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	N	D	L	E	M	G	K	I	L	G	A	C	E	L	T	V	G	T	R	L	H	.	.	.	.	.	S	A	I	I	S	M	N	F	A	T	P	A	I	A	I	N	Y	E	H	K	S	A	G	I	M	Q	Q	L	G	L	P	E	M	A	I	D	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																			.									.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.									.
Template Sequence		V	L	T	D	E	R	V	D	M	M	Y	N	A	C	D	V	I	V	N	C	S	S	G	E	G	F	G	L	C	S	A	E	G	A	V	L	G	K	P	L	I	I	S	A	V	G	.	G	A	D	D	Y	F	S	G	.	D	C	V	Y	K	I	K	P	S	A	W	I	S	V	D	D	R	D	G	I	G	G	I	E
Template Known Secondary structure																S							S			S	S									T	T	T										.						S		T	.	T	T	S												T	T	T		S	S
Template Predicted Secondary structure																																																.									.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
			376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure		.																																				.
Query SS confidence		.																																				.
Query Sequence		.	H	L	L	D	G	S	L	Q	A	M	V	A	D	T	L	G	Q	L	P	A	L	N	A	R	L	S	E	A	V	S	R	E	R	Q	T	.	G	M	Q	M	V	Q	S	V	L	E	R	I
Query Conservation		.																																				.
Alig confidence		.																		.																		.
Template Conservation																				.
Template Sequence		G	I	I	D	V	D	D	L	V	E	A	F	T	F	F	K	D	E	.	K	N	R	K	E	Y	G	K	R	V	Q	D	F	V	K	T	K	P	T	W	D	D	I	S	S	D	I	I	D	F
Template Known Secondary structure																T	T	S		.															T	T	S
Template Predicted Secondary structure																				.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.