Job Description P71242 Confidence 98.32% Date Thu Jan 5 12:12:37 GMT 2012 Rank 16 Aligned Residues 362 % Identity 11% Template c3dzcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Resolution 2.35 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	K	.	L	L	I	L	G	N	H	T	C	G	N	R	G	D	S	A	I	L	R	G	L	L	D	A	I	N	I	L	N	P	H	A	E	V	D	V	M	S	R	Y	P	V	S	S	S	W	L	L	N	R	P	V	M	G	D	P	L	F	L	Q	M	K	Q	H	N	S	A	A	G	V	V	G	R	V	K	K	V
Query Conservation				.
Alig confidence				.						.	.	.	.																					.
Template Conservation										.	.	.	.																					.
Template Sequence		M	K	K	V	L	I	V	F	.	.	.	.	G	T	R	P	E	A	I	K	M	A	P	L	V	Q	Q	L	C	Q	D	N	.	R	F	V	A	K	V	C	V	T	G	Q	H	R	E	M	L	D	Q	V	L	E	L	F	S	I	T	P	D	F	D	L	N	I	M	E	P	G	Q	T	L	N	G	V	T	S	K	I
Template Known Secondary structure										.	.	.	.		S																		T	.	T										S	S	S										T	T				S								T	T
Template Predicted Secondary structure										.	.	.	.																					.
Template SS confidence
		1	.	.	.	.	.	.	.					.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	R	R	Y	Q	H	Q	V	L	L	S	R	V	T	D	T	G	K	L	R	N	I	A	I	A	Q	G	F	T	D	F	V	R	L	L	S	G	Y	D	A	I	I	Q	V	G	G	S	F	F	V	D	L	Y	G	V	P	Q	F	E	H	A	L	C	T	F	M	A	K	K	P	L	F	M	I	G	H	S	V	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		L	L	G	M	Q	Q	V	L	S	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	D	V	V	L	V	H	G	D	.	.	.	.	.	.	.	T	A	T	T	F	A	A	S	L	A	A	Y	Y	Q	Q	I	P	V	G	H	V	E	A	G	L	R
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S						T	T	.	.	.	.	.	.	.	S												T	T	T							T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.																											.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure					.	.	.																																															.	.	.	.	.	.
Query SS confidence					.	.	.																																															.	.	.	.	.	.
Query Sequence		P	F	Q	.	.	.	D	E	Q	F	N	Q	L	A	N	Y	V	F	G	H	C	D	A	L	I	L	R	E	S	V	S	F	D	L	M	K	R	S	N	I	T	T	A	K	V	E	H	G	V	D	T	A	.	.	.	.	.	.	W	L	V	D	H	H	T	E	D	F	T	A	S	Y	A	V	Q	H	W	L	D	V
Query Conservation					.	.	.																																															.	.	.	.	.	.
Alig confidence					.	.	.																																															.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	N	I	Y	S	P	W	P	E	E	G	N	R	K	L	T	A	A	L	T	Q	Y	H	F	A	P	T	D	T	S	R	A	N	L	L	Q	E	N	Y	N	A	E	N	I	F	V	T	G	N	T	V	I	D	A	L	L	A	V	R	E	K	I	H	T	D	M	D	L	Q	A	T	L	E	S	Q	F	P	M	L
Template Known Secondary structure			S		T	T	S	S	T	T											T		S					S	S										T	T			G	G	G																																T		T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	Q	K	T	V	A	I	T	L	R	E	L	A	P	F	D	K	R	L	G	T	T	Q	Q	A	Y	E	K	A	F	A	G	V	V	N	R	I	L	D	E	G	Y	Q	V	I	A	L	S	T	C	T	G	I	D	S	Y	N	K	D	D	R	M	V	A	L	N	L	R	Q	H	I	S	D	P	A	R	Y	H
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		D	A	S	K	K	L	I	L	V	T	G	H	R	R	E	.	.	.	.	.	.	.	.	S	F	G	G	G	F	E	R	I	C	Q	A	L	I	T	T	A	E	Q	H	P	E	C	Q	I	L	Y	P	V	H	L	.	.	.	.	.	.	.	N	P	N	V	R	E	P	V	N	K	L	L	K	G	V	S	N	I	V
Template Known Secondary structure			T	T	S								S		B		.	.	.	.	.	.	.	.			T	T																	T	T									B	.	.	.	.	.	.	.												T	T	T		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	M	D	E	L	N	D	L	E	M	G	K	I	L	G	A	C	E	L	T	V	G	T	R	L	H	S	A	I	I	S	M	N	F	A	T	P	A	I	A	I	N	Y	E	H	K	S	A	G	I	M	Q	Q	L	G	L	P	E	M	A	I	D	I	R	H	L	L	D	G	S	L	Q	A	M	V	A	D	T	L
Query Conservation
Alig confidence							.																																																	.	.	.	.									.
Template Conservation							.																																																	.	.	.	.									.
Template Sequence		L	I	E	P	Q	.	Q	Y	L	P	F	V	Y	L	M	D	R	A	H	I	I	L	T	D	S	G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L	V	M	R	E	T	T	E	R	P	E	A	V	A	A	.	.	.	.	G	T	V	K	L	V	G	T	.	N	Q	Q	Q	I	C	D	A	L	S	L	L	L
Template Known Secondary structure							.													S					S		S	G	G	G	T	T	G	G	G	G	T								S	S		S								.	.	.	.	T	S					T	T	.
Template Predicted Secondary structure							.																																																	.	.	.	.									.
Template SS confidence
		268	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	P	A	L	N	A	R	L	S	E	A	V	S	R	E	R	Q	T	G	M	Q	M	V	Q	S	V	L	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	P	Q	A	Y	Q	A	M	S	Q	A	H	N	P	Y	G	D	G	K	A	C	Q	R	I	A	D	I	L	A	K
Template Known Secondary structure												T	S			T	T			S
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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