Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	E	L	M	V	V	H	P	H	I	F	W	L	S	L	G	G	L	L	L	A	A	E	M	L	G	G	N	G	Y	L	L	W	S	G	V	A	A	V	I	T	G	L	V	V	W	L	V	P	L	G	W	E	W	Q	G	V	M	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	I	L	T	L	L	A	A	W	L	W	W	K	W	L	S	R	R	V	R	E	Q	K	H	S	D	S	H	L	N	Q	R	G	Q	Q	L	I	G	R	R	F	V	L	E	S	P	L	V	N	G	R	G	H	M	R	V	G	D	S	S
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Sequence		W	P	V	S	A	S	E	D	L	G	A	G	T	H	V	E	V	I	A	I	E	G	I	T	L	H	I	R	A	V	S	S
Secondary structure
SS confidence
Disorder										?		?																			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2k5h chain A Region: 74 - 151 Aligned: 78 Modelled: 78 Confidence: 99.6% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a Phyre2 PDB 2exd chain A domain 1 Region: 81 - 151 Aligned: 70 Modelled: 70 Confidence: 99.5% Identity: 17% Fold: OB-fold Superfamily: NfeD domain-like Family: NfeD domain-like Phyre2 PDB 3cp0 chain A Region: 94 - 151 Aligned: 58 Modelled: 58 Confidence: 99.4% Identity: 24% PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum Phyre2 PDB 2k14 chain A Region: 82 - 151 Aligned: 70 Modelled: 70 Confidence: 99.0% Identity: 19% PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis Phyre2 PDB 3fjs chain C Region: 110 - 147 Aligned: 38 Modelled: 38 Confidence: 42.6% Identity: 26% PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution Phyre2 PDB 1mvf chain D Region: 129 - 150 Aligned: 21 Modelled: 22 Confidence: 42.6% Identity: 29% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 3e0e chain A Region: 107 - 140 Aligned: 32 Modelled: 34 Confidence: 41.3% Identity: 28% PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b Phyre2 PDB 1xru chain A domain 1 Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 36.9% Identity: 23% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: KduI-like Phyre2 PDB 2nv4 chain A Region: 133 - 152 Aligned: 20 Modelled: 20 Confidence: 35.7% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0066 protein af_0241; PDBTitle: crystal structure of upf0066 protein af0241 in complex with2 s-adenosylmethionine. northeast structural genomics3 consortium target gr27 Phyre2 PDB 1ywk chain E Region: 109 - 143 Aligned: 35 Modelled: 35 Confidence: 35.5% Identity: 14% PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis Phyre2 PDB 3a5z chain F Region: 105 - 132 Aligned: 27 Modelled: 28 Confidence: 32.3% Identity: 22% PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p Phyre2 PDB 1ywk chain A domain 1 Region: 109 - 143 Aligned: 35 Modelled: 35 Confidence: 28.4% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: KduI-like Phyre2 PDB 2p0p chain A Region: 116 - 142 Aligned: 27 Modelled: 27 Confidence: 27.0% Identity: 15% PDB header:metal binding protein Chain: A: PDB Molecule:alr1010 protein; PDBTitle: calcium binding protein in the free form Phyre2 PDB 1npp chain A domain 2 Region: 125 - 152 Aligned: 28 Modelled: 28 Confidence: 26.5% Identity: 21% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2e6z chain A Region: 123 - 152 Aligned: 30 Modelled: 30 Confidence: 26.0% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 3okx chain A Region: 133 - 152 Aligned: 20 Modelled: 20 Confidence: 24.9% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yaeb-like protein rpa0152; PDBTitle: crystal structure of yaeb-like protein from rhodopseudomonas palustris Phyre2 PDB 2yv5 chain A Region: 99 - 150 Aligned: 51 Modelled: 52 Confidence: 24.6% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 PDB 1ueb chain A domain 1 Region: 105 - 132 Aligned: 27 Modelled: 28 Confidence: 24.4% Identity: 15% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 PDB 2ozj chain B Region: 110 - 147 Aligned: 38 Modelled: 35 Confidence: 24.2% Identity: 8% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution Phyre2 PDB 1nnx chain A Region: 107 - 139 Aligned: 30 Modelled: 33 Confidence: 23.9% Identity: 13% Fold: OB-fold Superfamily: Hypothetical protein YgiW Family: Hypothetical protein YgiW Phyre2 1 c2k5hA_ 2 d2exda1 3 c3cp0A_ 4 c2k14A_ 5 c3fjsC_ 6 d1mvfd_ 7 c3e0eA_ 8 d1xrua1 9 c2nv4A_ 10 c1ywkE_ 11 c3a5zF_ 12 d1ywka1 13 c2p0pA_ 14 d1nppa2 15 c2e6zA_ 16 c3okxA_ 17 c2yv5A_ 18 d1ueba1 19 c2ozjB_ 20 d1nnxa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k5hA_ 99.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 2 d2exda1 99.5 17 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 3 c3cp0A_ 99.4 24 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 4 c2k14A_ 99.0 19 PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis 5 c3fjsC_ 42.6 26 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 6 d1mvfd_ 42.6 29 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 7 c3e0eA_ 41.3 28 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 8 d1xrua1 36.9 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 9 c2nv4A_ 35.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0066 protein af_0241; PDBTitle: crystal structure of upf0066 protein af0241 in complex with2 s-adenosylmethionine. northeast structural genomics3 consortium target gr27 10 c1ywkE_ 35.5 14 PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis 11 c3a5zF_ 32.3 22 PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p 12 d1ywka1 28.4 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 13 c2p0pA_ 27.0 15 PDB header:metal binding protein Chain: A: PDB Molecule:alr1010 protein; PDBTitle: calcium binding protein in the free form 14 d1nppa2 26.5 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 15 c2e6zA_ 26.0 27 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 16 c3okxA_ 24.9 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yaeb-like protein rpa0152; PDBTitle: crystal structure of yaeb-like protein from rhodopseudomonas palustris 17 c2yv5A_ 24.6 14 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 18 d1ueba1 24.4 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 19 c2ozjB_ 24.2 8 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 20 d1nnxa_ 23.9 13 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 21 d1nz9a_ not modelled 23.9 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 22 d1x6oa1 not modelled 23.7 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 23 d2huha1 not modelled 23.7 8 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 24 d1ub4c_ not modelled 21.8 22 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 25 c2qjlA_ not modelled 21.8 16 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 26 d1vfsa1 not modelled 21.5 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 27 c2k6pA_ not modelled 21.1 29 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 28 d1v43a2 not modelled 20.9 26 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 29 d2fo0a1 not modelled 20.9 13 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 30 d1tkea1 not modelled 20.8 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 31 d1u0la1 not modelled 20.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 32 d1wgka_ not modelled 20.0 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 33 d1xo3a_ not modelled 19.7 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 34 d1orua_ not modelled 19.6 16 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 35 d1k25a2 not modelled 19.5 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 36 c2kvqG_ not modelled 19.2 16 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 37 c2jvvA_ not modelled 19.2 16 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 38 c1xtdA_ not modelled 18.5 19 PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a 39 d1wfwa_ not modelled 18.5 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 40 d1tq5a1 not modelled 17.9 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 41 d1yhfa1 not modelled 17.7 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 42 c1bkbA_ not modelled 17.6 19 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 5a; PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum 43 d1whoa_ not modelled 17.3 14 Fold:C2 domain-like Superfamily:PHL pollen allergen Family:PHL pollen allergen 44 d2vv5a1 not modelled 17.3 22 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 45 c2pfwB_ not modelled 17.2 16 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 46 c2k9xA_ not modelled 17.0 29 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 47 c3b9bA_ not modelled 16.9 16 PDB header:hydrolase Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase 48 c3di4A_ not modelled 16.3 27 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf1989; PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution 49 c3oyyA_ not modelled 16.2 15 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p 50 c2i0nA_ not modelled 15.8 9 PDB header:structural protein Chain: A: PDB Molecule:class vii unconventional myosin; PDBTitle: structure of dictyostelium discoideum myosin vii sh3 domain2 with adjacent proline rich region 51 c3fn2A_ not modelled 15.3 29 PDB header:transferase Chain: A: PDB Molecule:putative sensor histidine kinase domain; PDBTitle: crystal structure of a putative sensor histidine kinase domain from2 clostridium symbiosum atcc 14940 52 d2pi2a1 not modelled 15.1 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 53 c3treA_ not modelled 14.9 15 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii 54 d1ue9a_ not modelled 14.7 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 55 c1vftA_ not modelled 14.7 17 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae 56 c3e0jG_ not modelled 14.2 13 PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 57 c3oruA_ not modelled 14.1 27 PDB header:metal binding protein Chain: A: PDB Molecule:duf1989 family protein; PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution 58 d2gcxa1 not modelled 14.0 0 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 59 c2jw4A_ not modelled 13.8 6 PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: nmr solution structure of the n-terminal sh3 domain of2 human nckalpha 60 d1dm9a_ not modelled 13.6 11 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 61 c1dm9A_ not modelled 13.6 11 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 62 d1zud21 not modelled 13.3 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 63 c3hksB_ not modelled 13.1 19 PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana 64 d1tygb_ not modelled 12.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 65 d1nyra2 not modelled 12.8 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 66 c2j6kE_ not modelled 12.4 4 PDB header:protein binding Chain: E: PDB Molecule:cd2-associated protein; PDBTitle: n-terminal sh3 domain of cms (cd2ap human homolog) 67 c2dy3B_ not modelled 12.2 17 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 68 c3lwcA_ not modelled 12.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 69 d1wlpb1 not modelled 11.9 26 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 70 c2eifA_ not modelled 11.5 15 PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii 71 c3cwiA_ not modelled 11.1 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 72 d1j3ta_ not modelled 11.1 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 73 c3dwmA_ not modelled 10.9 19 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 74 c1ybyB_ not modelled 10.8 15 PDB header:translation Chain: B: PDB Molecule:translation elongation factor p; PDBTitle: conserved hypothetical protein cth-95 from clostridium2 thermocellum 75 c1uebB_ not modelled 10.6 15 PDB header:rna binding protein Chain: B: PDB Molecule:elongation factor p; PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8 76 d1ueba3 not modelled 10.4 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 77 c3gf5A_ not modelled 10.3 18 PDB header:structural protein Chain: A: PDB Molecule:major vault protein; PDBTitle: crystal structure of the p21 r1-r7 n-terminal domain of murine mvp 78 d1bkba1 not modelled 10.2 20 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 79 d1iz6a1 not modelled 10.2 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 80 c3k3sG_ not modelled 10.1 20 PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. 81 c1iz6B_ not modelled 10.0 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:initiation factor 5a; PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii 82 c3i4oA_ not modelled 10.0 15 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 83 d2as0a1 not modelled 10.0 35 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 84 d1oqka_ not modelled 10.0 13 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 85 d1vqot1 not modelled 9.5 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 86 c2rqrA_ not modelled 9.3 23 PDB header:protein binding Chain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex 87 c2kymA_ not modelled 9.2 14 PDB header:signaling protein Chain: A: PDB Molecule:bud emergence protein 1; PDBTitle: solution structure of the bem1p sh3-ci domain from l.elongisporus in2 complex with ste20p peptide 88 d1psea_ not modelled 9.2 23 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 89 c1y7xA_ not modelled 9.2 11 PDB header:structural protein, protein binding Chain: A: PDB Molecule:major vault protein; PDBTitle: solution structure of a two-repeat fragment of major vault2 protein 90 d2d40a1 not modelled 9.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 91 c1tygG_ not modelled 9.2 14 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 92 c2jlnA_ not modelled 9.1 21 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 93 c1zlmA_ not modelled 9.1 5 PDB header:signaling protein Chain: A: PDB Molecule:osteoclast stimulating factor 1; PDBTitle: crystal structure of the sh3 domain of human osteoclast2 stimulating factor 94 c3p8bB_ not modelled 9.0 30 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 95 d1m1ha1 not modelled 8.9 15 Fold:N-utilization substance G protein NusG, insert domain Superfamily:N-utilization substance G protein NusG, insert domain Family:N-utilization substance G protein NusG, insert domain 96 d1uhfa_ not modelled 8.9 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 97 c4a1cS_ not modelled 8.8 10 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 98 c2kq8A_ not modelled 8.7 27 PDB header:hydrolase Chain: A: PDB Molecule:cell wall hydrolase; PDBTitle: solution nmr structure of a domain from bt9727_4915 from2 bacillus thuringiensis, northeast structural genomics3 consortium target bur95a 99 c2k6dA_ not modelled 8.5 14 PDB header:sh3 domain/ubiquitin Chain: A: PDB Molecule:sh3 domain-containing kinase-binding protein 1; PDBTitle: cin85 sh3-c domain in complex with ubiquitin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0