 |
Job Description | P0ADG7 | Confidence | 95.03% | Date | Thu Jan 5 11:20:59 GMT 2012 |
Rank | 304 | Aligned Residues | 89 |
% Identity | 19% | Template | c3noyA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; |
PDBTitle: crystal structure of ispg (gcpe)
|
Resolution | 2.70 Å |
|
 |
  |   |
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | E | E | R | V | D | A | L | V | A | A | G | V | D | V | L | L | I | D | S | S | H | G | H | S | E | G | V | L | Q | R | I | R | E | T | R | A | K | Y | P | D | L | Q | I | I | G | G | N | V | A | T | A | A | G | A | R | A | L | A | E | A | G | C | S | A | V | K | V | G | I | G | P | G | S | I | C | T | T | R | I |
Query Conservation |   |
  |   |
|
|   |   |   |
|   |   |
|
|   |
|   |
|   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
|
|   |
|   |
|   |
|   |
|   |
|   |   |
|   |   |
|
|
|
|   |
|   |
|
|   |
|   |
|   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
  |
|   |
|
|   |   |
|   |   |
|
|   |
|
|
|
|
|   |
| . | . | . |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   | . |   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|
| . | . |
|
|
|
|
| . | . | . | . | . | . |
Template Sequence |   |
T | L | N | Q | I | K | R | L | Y | E | A | G | C | E | I | V | R | V | A | V | . |
. |
. |
P | H | K | E | D | V | E | A | L | E | E | I | V | K | K | S | . |
P | M | P | V | I | A | D | I | H | F | A | P | S | Y | A | F | L | S | M | E | K | G | V | H | G | I | R | . |
. |
I | N | P | G | N | . |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
| . | . | . |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | S | S |
|  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  | . | . |  |
|  |  |  | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . |  |
|
|
|
| . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | |
|
|
. | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
. | . | . | . | . | |
|
|
|
|
|
  |
  |   |
310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | G | V | G | V | P | Q | I | T | A | V | A | D | A | V | E | A | L | E | G | T | G | I | P | V |
Query Conservation |   |
  |   |   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |
|   |   |   |
|   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
I | G | K | E | E | I | V | R | E | I | V | E | E | A | K | R | R | G | V | A | V |
Template Known Secondary structure |   |
. | . | . | . | . |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
107 | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|