Job Description P0ADG7 Confidence 98.90% Date Thu Jan 5 11:20:59 GMT 2012 Rank 159 Aligned Residues 168 % Identity 13% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.																.	.	.	.	.
Predicted Secondary structure																																																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	T	V	K	D	F	Q	K	A	E	R	K	P	N	A	C	K	D	E	Q	G	R	L	R	V	G	A	A	V	G	A	G	A	G	N	E	E	R	V	D	A	L	V	A	A	.	G	V	D	V	L	L	I	D	S	S	H	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	G	V	L
Query Conservation																																																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	T	V	D	Q	A	V	L	R	G	N	R	E	R	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R
Template Known Secondary structure											S										G	G	G		S								S															T	T		S										S							T		G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.											280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		Q	R	I	R	E	T	R	A	K	Y	P	D	L	Q	I	I	G	G	N	V	A	.	.	.	.	.	.	.	.	.	.	T	A	A	G	A	R	A	L	A	E	A	G	C	S	A	V	K	V	.	G	I	G	P	G	S	I	C	T	T	R	I	V	T	G	V	G	V	P	Q	I	T	A	V	A	D	A	V	E	A
Query Conservation																							.	.	.	.	.	.	.	.	.	.																			.
Alig confidence												.											.	.	.	.	.	.	.	.	.	.																			.
Template Conservation												.
Template Sequence		E	I	L	K	A	X	G	E	A	V	.	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D
Template Known Secondary structure									T	T		.	S	S								S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S
Template Predicted Secondary structure												.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	G	T	G	I	P	V	I	A	D	G	G	I	R	F	S	G	D	I	A	K	A	I	A	A	G	A	S	A	V	M	V	G	S	M	L	A	G
Query Conservation
Alig confidence					.	.																					.
Template Conservation					.	.																					.
Template Sequence		F	P	Q	.	.	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	.	R	V	D	G	V	X	L	G	R	A	V	Y	E
Template Known Secondary structure			T	T	.	.	S						S	S			S									T	.	T	S	S					S
Template Predicted Secondary structure					.	.																					.
Template SS confidence
		195	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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