 |
Job Description | P0ADG7 | Confidence | 99.64% | Date | Thu Jan 5 11:20:59 GMT 2012 |
Rank | 96 | Aligned Residues | 118 |
% Identity | 15% | Template | c2pfiA_ |
PDB info |
PDB header:transport protein | Chain: A: PDB Molecule:chloride channel protein clc-ka; |
PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka
|
Resolution | 1.60 Å |
|
 |
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | |
|
. | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
|
|
|
|
|
. | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
K | K | H | E | S | G | V | V | T | D | P | Q | T | V | L | P | T | T | T | L | R | E | V | K | E | L | T | E | R | N | G | F | A | G | Y | P | V | V | T | E | E | N | . |
. |
E | L | V | G | I | I | T | G | R | D | V | R | F | V | T | D | L | N | Q | P | V | S | V | Y | M | . |
. |
. |
. |
. |
. |
T | P | K | E | R |
Query Conservation |   |
|   |   |   |   |   |
|   |   |
|
|
|   |
|   |   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|
|
|
|
|   |
| . | . |   |
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|
| . | . | . | . | . | . |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | R | V | E | H | F | M | N | H | S | I | T | T | L | A | K | D | T | P | L | E | E | V | V | K | V | V | T | S | T | D | V | T | E | Y | P | L | V | E | S | T | E | S | Q | I | L | V | G | I | V | Q | R | A | Q | L | V | Q | A | L | Q | A | G | H | Q | Q | C | L | Q | D | I | L | A | R | G | C | P | T | E | P | V |
Template Known Secondary structure |   |
| B |  |  |  |  |
| B |
|
|
|
|
|  |  | T | T |
| B |  |  |  |  |  |  |  |  |  | T |
|
|
| S |  |  |  |  |  | S |
| T | T | T |
| B |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| B |  |  |  |  |  |  | T | T |
|
|
| B |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
545 | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . |
  |
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | T | V | R | E | G | E | A | R | E | V | V | L | A | K | M | H | E | K | R | V | E | K | A | L | V | V | D | D | E | F | H | L | I | G | M | I | T | V | K | D | F | Q | K | A | E |
Query Conservation |   |
  |
|
|
|   |   |   |   |   |
|   |
|
|
|   |   |
|   |   |   |   |
|   |   |
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|   |   |
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
| . |   |
|   |
|
|
|
|
|
|   |   |
|
|
|   |
|
|
Template Sequence |   |
T | L | T | L | F | S | E | T | T | L | H | Q | A | Q | N | L | F | K | L | L | N | L | Q | S | L | F | V | T | S | . |
R | G | R | A | V | G | C | V | S | W | V | E | M | K | K | A | I |
Template Known Secondary structure |   |
|
|
|  |  | T | T |
| B |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  | . | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
632 | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | |
. | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|