 |
Job Description | P0ADG7 | Confidence | 93.14% | Date | Thu Jan 5 11:20:59 GMT 2012 |
Rank | 330 | Aligned Residues | 106 |
% Identity | 15% | Template | c1ydoC_ |
PDB info |
PDB header:lyase | Chain: C: PDB Molecule:hmg-coa lyase; |
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
|
Resolution | 2.71 Å |
|
 |
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | |
|
. | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | |
|
|
|
. | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | G | N | E | E | R | V | D | A | L | V | A | A | G | V | D | V | L | L | I | D | S | S | H | G | . |
. |
H | S | E | G | V | L | Q | R | I | R | E | T | R | A | K | Y | P | D | L | Q | I | I | G | G | . |
. |
. |
. |
N | V | A | T | A | A | G | A | R | A | L | A | E | A | G | C | S | A | V | K | V | G | I | G | P |
Query Conservation |   |
  |   |   |   |
|
|   |   |   |
|   |   |
|
|   |
|   |
|   |
|
|   |
|   |
| . | . |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
|
|   |
| . | . | . | . |   |
|   |
|   |
|   |
|   |   |
|   |   |
|
|
|
|   |
|   |
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|   |
|   |
|   |   |
|
|
|   |   |
|
|   |
|
|   |
|
Template Sequence |   |
E | Q | V | I | R | L | S | E | A | L | F | E | F | G | I | S | E | L | S | L | G | D | T | I | G | A | A | N | P | A | Q | V | E | T | V | L | E | A | L | L | A | R | F | P | A | N | Q | I | A | L | H | F | H | D | T | R | G | T | A | L | A | N | X | V | T | A | L | Q | X | G | I | T | V | F | D | G | S | A | G | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |
|  |  |  |  |
| S | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| G | G | G |  |  |  |  |
| B | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  | B | G | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
  |
  |   |
302 | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | I | C | T | T | R | I | V | T | G | V | G | V | P | Q | I | T | A | V | A | D | A | V | E | A | L | E | G | T | G | I |
Query Conservation |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
Template Sequence |   |
L | G | G | C | P | Y | A | P | G | S | S | G | N | A | A | T | E | D | I | V | Y | X | L | E | Q | X | D | I | K | T | N | V |
Template Known Secondary structure |   |
|
|  |  | T | T |  |  |  |  |  |
| B |
| B |  |  |  |  |  |  |  |  |  |  | T | T |
| B |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
237 | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|