Job Description P21513 Confidence 81.50% Date Thu Jan 5 11:38:24 GMT 2012 Rank 74 Aligned Residues 64 % Identity 25% Template c3trzE_ PDB info PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element Resolution 2.90 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.									.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.
Query Sequence		G	K	I	T	R	I	E	P	S	L	E	A	A	F	V	D	Y	G	A	.	.	.	.	.	.	.	.	E	R	H	G	F	L	P	L	K	E	I	A	R	E	Y	F	P	A	N	Y	S	A	H	G	R	P	N	I	K	D	V	L	R	E	G	Q	E	V	I	V	Q	I	D	K	E	E	R	G	N	K	G	A	A
Query Conservation																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	C	K	W	F	N	V	R	M	G	F	G	F	L	S	M	T	A	R	A	G	V	A	L	D	P	P	V	D	V	F	V	H	Q	S	K	L	H	M	E	G	F	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	G	E	A	V	E	F	T	F	K	K	S	A	K	G	L	E	S	I	R
Template Known Secondary structure									T	T	T	T										T	T													G	G	G	B			S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.														.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		116	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	T	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	G	P	G
Template Known Secondary structure				S	G	G
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions