Job Description P21513 Confidence 66.76% Date Thu Jan 5 11:38:24 GMT 2012 Rank 91 Aligned Residues 121 % Identity 15% Template c3ayhB_ PDB info PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase iii subunit rpc8; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii Resolution 2.19 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	I	N	A	T	Q	Q	E	E	L	R	V	A	L	V	D	G	Q	R	L	Y	D	L	D	I	E	S	P	G	H	E	Q	K	K	A	N	I	Y	K	G	K	I	T	R	I	E	P	S	L	E	A	A	F	V	D	Y	G	A	E	R	H	G	F	L	P	L	K	E	I	A	R	E	Y	F	P	A	N	Y	S
Query Conservation
Alig confidence																																																		.	.
Template Conservation																																																		.	.
Template Sequence		C	V	Y	D	F	L	K	I	G	E	G	I	I	K	Y	G	D	G	S	S	Y	M	N	V	V	F	R	L	I	I	F	R	P	F	R	G	E	V	M	L	G	K	I	K	S	C	S	E	.	.	E	G	I	R	V	T	I	S	F	F	D	D	I	F	I	P	K	D	M	L	F	D	P	C	V	F	R	P	D	E
Template Known Secondary structure																T	T	T																		T	T												T	.	.	T							S	S								G	G	G	B		T	T					G	G	G
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		84	.										.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.
Query Sequence		A	H	.	.	.	.	.	.	.	.	.	G	R	P	N	I	K	D	V	L	R	E	G	Q	E	V	I	V	Q	I	D	K	E	E	R	G	N	K	G	A	A	L	T	T	F	I	S	L	A	G	S	Y	L
Query Conservation				.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																														.
Template Conservation																																										.
Template Sequence		R	A	W	V	W	K	I	E	G	E	D	G	S	E	G	T	E	L	Y	F	D	I	D	E	E	I	R	F	Q	I	E	S	E	D	F	V	D	V	S	P	.	Y	T	L	I	A	S	C	S	R	D	G	L
Template Known Secondary structure		T										T	T	S									T	T																	S	.							B		S	T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions