Job Description P21513 Confidence 27.34% Date Thu Jan 5 11:38:24 GMT 2012 Rank 175 Aligned Residues 154 % Identity 18% Template c2zmeB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	L	S	F	R	L	K	H	W	E	A	I	K	K	A	A	E	S	R	P	A	P	F	L	I	H	Q	E	S	N	V	I	V	R	A	F	R	D	Y	L	R	Q	D	I	G	E	I	L	I	D	N	P	K	V	L	E	L	A	R	Q	H	I	A	A	L	G	R	P	D	F	S	S	K	I	K	L	Y	T	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		E	D	L	S	K	L	M	I	K	A	K	E	M	V	E	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	I	A	N	K	I	K	D	K	Q	G	D	I	T	E	D	E	.	.	.	T	I	R	F	K	S	Y	L	L	S	M	G	I	A	N	P	V	T	R	E	T	Y	G	S	G
Template Known Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S								S			S		.	.	.											T	T					S	S		S	T	T			S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		E	I	P	L	F	S	H	Y	Q	I	E	S	Q	I	E	S	A	F	Q	R	E	V	R	L	P	S	G	G	S	I	V	I	D	S	T	E	A	L	T	A	I	D	I	N	S	A	R	A	T	R	G	G	D	I	E	E	T	A	F	N	T	N	L	E	A	A	D	E	I	A	R	Q	L	R	L	R	D	L	.	G
Query Conservation																																																																																.
Alig confidence			.	.	.																		.																		.	.	.	.					.	.																														.
Template Conservation			.	.	.																		.																		.	.	.	.					.	.
Template Sequence		T	.	.	.	Q	Y	H	M	Q	L	A	K	Q	L	A	G	I	L	Q	V	P	.	L	E	E	R	G	G	I	M	S	L	T	E	V	Y	C	L	V	.	.	.	.	N	R	A	R	.	.	G	M	E	L	L	S	P	E	D	L	V	N	A	C	K	M	L	E	A	L	K	L	P	L	R	L	R	V	F	D	S
Template Known Secondary structure			.	.	.																		.			T	T	T	S												.	.	.	.					.	.	S	S	S													T	T	G	G	G	T		S							T	T
Template Predicted Secondary structure			.	.	.																		.																		.	.	.	.					.	.
Template SS confidence
		239				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	V	I	D	F	I	D	M	T	P	V	R	H	Q	R	A	V	E	N	R	L	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	M	V	I	E	L	Q	S	H	K	E	E	E	M	V	A	S	A	L	E	T	V	S	E
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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