Job Description P21513 Confidence 96.50% Date Thu Jan 5 11:38:24 GMT 2012 Rank 38 Aligned Residues 119 % Identity 15% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	I	N	A	T	Q	Q	E	E	L	R	V	A	L	V	D	G	Q	R	L	Y	D	L	D	I	E	S	P	G	H	E	Q	K	K	A	N	I	Y	K	G	K	I	T	R	I	E	P	S	L	E	A	A	F	V	D	Y	G	A	E	R	H	G	F	L	P	L	K	E	I	A	R	E	Y	F	P	A	N	Y	S
Query Conservation
Alig confidence																																																			.	.										.
Template Conservation																																																			.	.										.
Template Sequence		A	V	T	T	I	D	N	I	G	A	G	V	I	Q	P	G	R	G	F	V	L	Y	P	V	K	Y	K	A	I	V	F	R	P	F	K	G	E	V	V	D	A	V	V	T	Q	V	N	K	V	.	.	G	L	F	T	E	I	G	P	M	.	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S
Template Known Secondary structure																S	S	S	S																	T	T												T	T	.	.							T	T		.						G	G	G	S		S	S					S	S	S
Template Predicted Secondary structure																																																			.	.										.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		84	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		A	H	G	R	.	.	.	P	N	I	K	D	V	L	R	E	G	Q	E	V	I	V	Q	I	D	K	E	E	R	G	N	K	G	A	A	L	T	T	F	I	S	L	A	G	S	Y	L
Query Conservation						.	.	.
Alig confidence						.	.	.																																.	.
Template Conservation																																								.	.
Template Sequence		N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V	G	T	R	V	D	K	N	D	I	F	A	I	G	.	.	S	L	M	D	D	Y	L
Template Known Secondary structure		S	S						T	T	S	S					T	T														T	T							.	.				S	T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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