 |
Job Description | P21513 | Confidence | 29.75% | Date | Thu Jan 5 11:38:24 GMT 2012 |
Rank | 165 | Aligned Residues | 70 |
% Identity | 17% | Template | c1wb1C_ |
PDB info |
PDB header:protein synthesis | Chain: C: PDB Molecule:translation elongation factor selb; |
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
|
Resolution | 3.0 Å |
|
 |
  |   |
298 | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | |
|
. | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
Query Sequence |   |
A | L | T | A | I | D | I | N | S | A | R | A | T | R | G | G | D | I | E | E | T | A | F | N | T | N | L | E | A | A | D | E | I | A | R | Q | L | R | L | R | D | L | G | G | L | I | V | I | D | F | I | D | M | T | P | V | R | H | Q | R | A | V | E | N | R | L | R | E | A | V | R | Q | D | R | A | . |
. |
R | I | Q |
Query Conservation |   |
|   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |
|   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | L | I | V | V | D | A | K | E | G | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | T | Q | T | G | E | H | M | L | I | L | D | H | F | N | I | P | I | I | V | V | I | T | K | S | D | N | A | G | T | E | E | I | K | R | T | E | M | I | M | K | S | I | L | Q | S | T | H | N | L | K | N | S | S |
Template Known Secondary structure |   |
|  |  |  |  |
| T | T | T |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |
|
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | G | G | G | G |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
  |
  |   |
376 | . | . | . | 380 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
I | S | H | I | S | R | F |
Query Conservation |   |
  |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
Template Sequence |   |
I | I | P | I | S | A | K |
Template Known Secondary structure |   |
 |  |  |
|
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
151 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|