Job Description P21513 Confidence 95.31% Date Thu Jan 5 11:38:24 GMT 2012 Rank 46 Aligned Residues 102 % Identity 14% Template c1nt9G_ PDB info PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii Resolution 4.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		D	G	Q	R	L	Y	D	L	D	I	E	S	P	G	H	E	Q	K	K	A	N	I	Y	K	G	K	I	T	R	I	E	P	S	L	E	A	A	F	V	D	Y	G	A	E	R	H	G	F	L	P	L	K	E	I	A	R	E	Y	.	F	P	A	N	Y	S	A	H	G	R	P	N	I	K	D	V	L	R	E	G	Q
Query Conservation																																																												.
Alig confidence																																		.	.											.														.
Template Conservation																																		.	.											.
Template Sequence		D	G	S	A	E	F	N	V	K	Y	R	A	V	V	F	K	P	F	K	G	E	V	V	D	G	T	V	V	S	C	S	Q	.	.	H	G	F	E	V	Q	V	G	P	M	.	K	V	F	V	T	K	H	L	M	P	Q	D	L	T	F	N	A	G	S	N	P	P	S	Y	Q	S	S	E	D	V	I	T	I	K	S
Template Known Secondary structure				S																T	T												T	.	.	T							S	S	S	.						T	T	T	S	S	S	S				B	T	T					S	S	S						S	S
Template Predicted Secondary structure																																		.	.											.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	I	V	Q	I	D	K	E	E	R	G	N	K	G	A	A	L	T	T	F	I	S	L	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	R	V	K	I	E	G	C	I	S	Q	V	S	S	I	H	A	I	G	S	I	K	E	D	Y
Template Known Secondary structure												S	S										S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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