Job Description P76501 Confidence 4.96% Date Thu Jan 5 12:23:38 GMT 2012 Rank 18 Aligned Residues 98 % Identity 5% Template c3mu3A_ PDB info PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Resolution 2.40 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																		.																																													.
Query SS confidence																		.																																													.
Query Sequence		N	Y	R	Q	D	A	K	Y	T	L	N	C	T	N	S	L	.	A	N	D	L	R	M	Q	L	K	G	N	T	S	T	I	N	G	E	T	V	L	S	T	N	I	T	G	L	G	I	R	I	E	N	S	A	D	N	S	L	F	A	V	G	.	E	N	S	W	T	P	F	N	I	N	N	Q	P	Q	L	K	A	V
Query Conservation																		.																																													.
Alig confidence																		.																																													.
Template Conservation
Template Sequence		D	P	Q	Q	D	F	A	F	S	I	D	R	C	S	D	V	T	T	H	T	F	D	I	R	A	A	M	V	L	R	Q	S	I	K	E	L	Y	A	K	V	D	L	I	I	N	G	K	T	V	L	S	Y	S	E	T	L	C	G	P	G	L	S	K	L	I	F	C	G	K	K	K	G	E	H	L	Y	Y	E	G	P
Template Known Secondary structure			T	T								S	S	G	G	G	G	G	S	S											S	S			S	S										T	T												S	T	T					T	T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	K	A	S	G	A	Q	L	A	A	G	E	F	N	A	S	L	T	M	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	T	L	G	I	K	E	I	P	Q	R	D	Y	T	I	T	A	R	L	T
Template Known Secondary structure		.				S	S	S	S
Template Predicted Secondary structure		.
Template SS confidence
			121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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