Job Description P30866 Confidence 98.29% Date Thu Jan 5 11:46:42 GMT 2012 Rank 258 Aligned Residues 96 % Identity 21% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																											.	.	.	.															.	.												.	.	.	.	.
Query SS confidence																		.	.																											.	.	.	.															.	.												.	.	.	.	.
Query Sequence		M	S	G	L	P	Q	G	R	P	T	F	G	A	A	Q	N	.	.	V	S	A	V	V	A	Y	D	L	S	A	H	M	L	D	V	V	A	Q	A	A	E	A	R	Q	L	.	.	.	.	K	N	I	T	T	R	Q	G	Y	A	E	S	L	P	.	.	F	A	D	N	A	F	D	I	V	I	S	.	.	.	.	.
Query Conservation																		.	.																											.	.	.	.															.	.												.	.	.	.	.
Alig confidence																		.	.																											.	.	.	.															.	.												.	.	.	.	.
Template Conservation
Template Sequence		V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P
Template Known Secondary structure				S		S	S	S							T	T		T	T																						T	T	T	G	G	G	T	T		T	T						S								S	S		S	S												S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	S	A	H	H	W	H	D	V	G	A	A	L	R	E	V	N	R	I	L	K	P	G	G	R	L	I	V	M
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		I	G	P	A	K	E	L	F	E	.	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q
Template Known Secondary structure		S	S	G	G	G	G	G	G	S	.
Template Predicted Secondary structure											.
Template SS confidence
		206	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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