Job Description P75849 Confidence 99.81% Date Thu Jan 5 12:14:59 GMT 2012 Rank 48 Aligned Residues 178 % Identity 16% Template c3zq4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	R	I	I	P	V	T	A	F	S	Q	.	.	.	N	C	S	L	I	W	C	E	Q	T	R	L	A	A	L	V	D	P	G	G	D	A	E	K	I	K	.	.	.	.	.	.	.	.	.	.	.	Q	E	V	D	D	S	G	L	T	L	M	Q	I	L	L	T	H	G	H	L	D	H	V	G	A	A	A	E
Query Conservation														.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.											.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		Q	T	A	V	F	A	L	G	G	L	G	E	I	G	K	N	T	Y	A	V	Q	F	Q	D	E	.	.	I	V	L	I	D	A	G	I	K	F	P	E	D	E	L	L	G	I	D	Y	V	I	P	D	Y	T	Y	L	V	K	N	E	D	K	I	K	G	L	F	I	T	H	G	H	E	D	H	I	G	G	I	P	Y
Template Known Secondary structure		S								S	B	S	S	S	S									T	T		.	.									B				T	T	S	T	T		S											T	T	G	G	G							S								T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		L	A	Q	H	Y	G	V	P	V	F	G	P	E	K	E	D	E	F	W	L	Q	G	L	P	A	Q	S	R	M	F	G	L	E	E	C	Q	P	L	T	P	D	R	W	L	N	E	G	D	T	I	S	I	G	N	V	T	L	Q	V	L	H	C	P	G	H	T	P	G	H	V	V	F	F	D	.	.	D	R	A	K
Query Conservation																																																																												.	.
Alig confidence																															.	.	.	.	.	.	.																																							.	.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		L	L	R	Q	V	N	I	P	V	Y	G	G	K	L	A	I	G	L	L	R	N	K	L	E	E	H	G	L	L	.	.	.	.	.	.	.	R	Q	T	K	L	N	I	I	G	E	D	D	I	V	K	F	R	K	T	A	V	S	F	F	R	T	T	H	S	I	P	D	S	Y	G	I	V	V	K	T	P	P	G	N
Template Known Secondary structure				T	T																							S	T	T	.	.	.	.	.	.	.	T	T	S							T	T						T	T									B		S	S	S	S									T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		146	.	.	.	150	.																												.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	I	S	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	F	K	G	G	V	G	R	S	D	F	P	R	G	D	H	N	Q	L	I	S	S	I	K	D	K	L	L	P	L	G	D	D	V	I	F
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	H	T	G	D	F	K	F	D	F	T	P	V	G	E	P	A	N	L	T	K	M	A	E	I	G	K	E	G	V	L	C	L	L	S	D	S	T	N	S	E	N	P	E	F	T	M	S	E	R	R	V	G	E	S	I	H	D	I	F	R	K	V	D	G	R	I	I	F
Template Known Secondary structure							S		B			S	S		S	S	S													T										T	T	T	T			S																					S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions