Job Description P75849 Confidence 99.65% Date Thu Jan 5 12:14:59 GMT 2012 Rank 54 Aligned Residues 149 % Identity 21% Template c3af5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure														.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	R	I	I	P	V	T	A	F	S	Q	.	.	.	N	C	S	L	I	W	C	E	Q	T	R	L	A	A	L	V	D	P	G	G	D	A	E	K	I	K	Q	E	V	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	L	M	Q	I	L	L	T	H	G	H	L	D	H	V	G	A	A
Query Conservation														.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.											.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		W	I	R	I	T	G	L	G	G	F	R	E	V	G	R	S	A	L	L	V	Q	T	D	E	S	.	.	F	V	L	V	D	F	G	V	N	V	A	M	L	N	D	P	Y	K	A	F	P	H	F	D	A	P	E	F	Q	Y	V	L	R	E	G	L	L	D	A	I	I	I	T	H	A	H	L	D	H	C	G	M	L
Template Known Secondary structure											S	S	S	S	S									S	S		.	.										G	G	G	T	T						S			T	T										T	T								S		S	S					T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		66	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure							.	.																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	A	Q	.	.	H	Y	G	V	P	V	F	G	P	E	K	E	D	E	F	W	L	Q	G	L	P	A	Q	S	R	M	F	G	L	E	E	C	Q	P	L	.	.	.	.	.	.	.	.	.	.	T	P	D	R	W	L	N	E	G	D	T	I	S	I	G	N	V	T	L	Q	V	L	H	C	P	G	H	T
Query Conservation							.	.																																				.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	L	F	R	Y	N	L	F	D	G	P	I	Y	T	T	P	P	T	R	D	L	M	V	L	L	Q	K	D	F	I	E	I	Q	Q	S	N	G	Q	D	P	L	Y	R	P	R	D	I	K	E	V	I	K	H	T	I	T	L	D	Y	G	E	V	R	D	I	S	P	D	I	R	L	T	L	H	N	A	G	H	I
Template Known Secondary structure							T	T				S																										T	T				S	S											T						T	T							T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		134	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		P	G	H	V	V	F	F	D	.	.	.	.	D	R	A	K	L	L	I	S	G	D	V
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		L	G	S	A	I	V	H	L	H	I	G	N	G	L	H	N	I	A	I	T	G	D	F
Template Known Secondary structure		T	T									T	T	T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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