Job Description P75849 Confidence 99.60% Date Thu Jan 5 12:14:59 GMT 2012 Rank 58 Aligned Residues 150 % Identity 19% Template c2xr1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure															.	.	.																																			.	.	.	.	.	.	.
Query SS confidence															.	.	.																																			.	.	.	.	.	.	.
Query Sequence		M	N	Y	R	I	I	P	V	T	A	F	S	Q	.	.	.	N	C	S	L	I	W	C	E	Q	T	R	L	A	A	L	V	D	P	G	G	D	A	E	K	I	K	Q	E	V	D	D	S	G	L	.	.	.	.	.	.	.	T	L	M	Q	I	L	L	T	H	G	H	L	D	H	V	G	A	A	A	E	L	A	Q
Query Conservation															.	.	.																																			.	.	.	.	.	.	.
Alig confidence															.	.	.											.	.																							.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		Q	W	V	R	V	T	A	L	G	G	C	K	E	V	G	R	S	C	F	L	L	S	T	P	E	S	.	.	R	I	L	I	D	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P	L	N	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	V	P	L	L	F	K
Template Known Secondary structure												S	S	S	S	B									S	S		.	.									B		S	S		S	S					T	T	S	T	T	T		S	G	G	G								S	S						T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		71		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																					.	.	.	.	.	.	.	.	.	.																																.
Query SS confidence			.																																					.	.	.	.	.	.	.	.	.	.																																.
Query Sequence		H	.	Y	G	V	P	V	F	G	P	E	K	E	D	E	F	W	L	Q	G	L	P	A	Q	S	R	M	F	G	L	E	E	C	Q	P	L	T	P	.	.	.	.	.	.	.	.	.	.	D	R	W	L	N	E	G	D	T	I	S	I	G	N	V	T	L	Q	V	L	H	C	P	G	H	T	P	G	H	V	V	.
Query Conservation			.																																					.	.	.	.	.	.	.	.	.	.																																.
Alig confidence			.																																					.	.	.	.	.	.	.	.	.	.																																.
Template Conservation
Template Sequence		Y	G	Y	E	G	P	V	Y	C	T	P	P	T	R	D	L	M	V	L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	I	P	Y	E	S	G	M	V	A	K	T	L	K	H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P	D	I	K	L	T	F	H	N	A	G	H	I	L	G	S	A	I	S
Template Known Secondary structure		T	T			S																											T					S											T						T	T							T	T									S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
			139	140	.	.	.	.			.	.	.	.	.	150	.	.
Predicted Secondary structure		.							.	.
Query SS confidence		.							.	.
Query Sequence		.	F	F	D	D	R	A	.	.	K	L	L	I	S	G	D	V
Query Conservation		.							.	.
Alig confidence		.							.	.
Template Conservation
Template Sequence		H	F	H	I	G	D	G	L	H	N	V	V	F	T	G	D	Y
Template Known Secondary structure						T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions