Job Description P75849 Confidence 99.53% Date Thu Jan 5 12:14:59 GMT 2012 Rank 62 Aligned Residues 149 % Identity 17% Template c2i7xA_ PDB info PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																										.	.	.	.	.																																				.	.	.	.	.
Query SS confidence										.	.																										.	.	.	.	.																																				.	.	.	.	.
Query Sequence		M	N	Y	R	I	I	P	V	.	.	T	A	F	S	Q	N	C	S	L	I	W	C	E	Q	T	R	L	A	A	L	V	D	P	G	G	.	.	.	.	.	D	A	E	K	I	K	Q	E	V	D	D	S	G	L	T	L	M	Q	I	L	L	T	H	G	H	L	D	H	V	G	A	A	A	E	L	.	.	.	.	.
Query Conservation										.	.																										.	.	.	.	.																																				.	.	.	.	.
Alig confidence										.	.																.	.									.	.	.	.	.																																				.	.	.	.	.
Template Conservation																											.	.
Template Sequence		M	T	Y	K	Y	N	C	C	D	D	G	S	G	T	T	V	G	S	V	V	R	F	D	N	V	.	.	T	L	L	I	D	P	G	W	N	P	S	K	V	S	Y	E	Q	C	I	K	Y	W	E	K	V	I	P	E	I	D	V	I	I	L	S	Q	P	T	I	E	C	L	G	A	H	S	L	L	Y	Y	N	F	T
Template Known Secondary structure											S	S	S	S	S									T	T		.	.										T	T	T	S											T	T	G	G	G									S	S					T	T								S
Template Predicted Secondary structure																											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
			69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure		.																																									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query SS confidence		.																																									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query Sequence		.	A	Q	H	Y	G	V	P	V	F	G	P	E	K	E	D	E	F	W	L	Q	G	L	P	A	Q	S	R	M	F	G	L	E	E	C	Q	P	L	T	P	D	.	.	.	.	.	.	.	.	.	.	.	.	R	W	L	N	E	G	D	T	I	S	I	G	.	.	.	.	N	V	T	L	Q	V	L	H	C	P	G
Query Conservation		.																																									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Alig confidence		.																																									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.									.
Template Conservation																																																																															.
Template Sequence		S	H	F	I	S	R	I	Q	V	Y	A	T	L	P	V	I	N	L	G	R	V	S	T	I	D	S	Y	A	S	A	G	V	I	G	P	Y	D	T	N	K	L	D	L	E	D	I	E	I	S	F	D	H	I	V	P	L	K	Y	S	Q	L	V	D	L	R	S	R	Y	D	G	L	T	L	L	A	Y	N	.	A	G
Template Known Secondary structure							T																								T	T	S	S	S	S	B	T	T			S											T	S					T	T						T	T	T	T	T	T								.		S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.
		132	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		H	T	P	G	H	V	V	F	F	D	.	.	D	R	A	K	L	L	I	S	G	D	V
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		V	C	P	G	G	S	I	W	C	I	S	T	Y	S	E	K	L	V	Y	A	K	R	W
Template Known Secondary structure		S	S	T	T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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