Job Description Q2A0K9 Confidence 99.38% Date Thu Jan 5 12:33:36 GMT 2012 Rank 21 Aligned Residues 185 % Identity 17% Template c2p51A_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit Resolution 1.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																						.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		M	N	D	G	K	Q	Q	S	T	F	L	F	H	D	Y	E	T	F	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	.	.	.	.	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		I	M	S	L	I	E	R	Y	P	V	V	S	M	D	T	E	F	P	G	V	V	A	R	P	L	G	V	F	K	S	S	D	D	Y	H	Y	Q	T	L	R	A	N	V	D	S	L	K	I	I	Q	I	G	L	A	L	S	D	E	E	G	N	A	P	V	E	A	C	T	W	Q	F	N	F	T	F	N	L	Q	D	D
Template Known Secondary structure						T	T	T	S																		S			S	S	S															S												T	T	S				T	T		S						B				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		57	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure												.	.	.																									.	.
Query SS confidence												.	.	.																									.	.
Query Sequence		Y	L	P	Q	P	G	A	V	L	I	.	.	.	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F	A	A	R	I	H	S	.	.	L	F	T	V	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D
Query Conservation												.	.	.																									.	.
Alig confidence				.								.	.	.																									.	.															.																			.	.	.	.	.	.	.	.
Template Conservation				.																																																			.																			.	.	.	.	.	.	.	.
Template Sequence		M	Y	.	A	P	E	S	I	E	L	L	T	K	S	G	I	D	F	K	K	H	Q	E	V	G	I	E	P	A	D	F	A	E	L	L	I	G	S	G	L	V	L	Q	E	E	V	T	W	I	T	F	H	S	.	G	Y	D	F	A	Y	L	L	K	A	M	T	Q	I	P	L	P	A	.	.	.	.	.	.	.	.
Template Known Secondary structure				.											T	T											B											T	T	T	S	S	S		T	T						S	S		.														S				S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																																																			.																			.	.	.	.	.	.	.	.
Template SS confidence
		117	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																						.	.																									.
Query SS confidence																						.	.																									.
Query Sequence		N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	.	.	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	N	G	I	.	E	H	S	N	A	H	D	A	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R
Query Conservation																						.	.																									.
Alig confidence		.	.	.	.																	.	.																									.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	E	Y	E	E	F	Y	K	I	L	C	I	Y	F	P	K	N	Y	D	I	K	Y	I	M	K	S	V	L	N	N	S	K	G	L	Q	D	I	A	D	D	L	Q	I	H	R	I	G	P	Q	H	Q	A	G	S	D	A	L	L	T	A	R	I	F	F	E	I	R	S	R
Template Known Secondary structure		.	.	.	.	S												S	S	S									T	T	T	T													T	T					S		T	T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions