Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	E	V	E	K	N	E	I	K	R	L	S	D	R	L	D	A	I	R	H	Q	Q	A	D	L	S	L	V	E	A	A	D	K	Y	A	E	L	E	K	E	K	A	T	L	E	A	E	I	A	R	L	R	E	V	H	S	Q	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?																						?	?	?	?	?	?																					?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	K	E	A	Q	K	L	M	K	M	P	F	Q	R	A	I	T	K	K	E	Q	A	D	M	G	K	L	K	K	S	V	R	G	L	V	V	V	H	P	M	T	A	L	G	R	E	M	G	L	Q	E	M	T	G	F	S	K	T	A	F
Secondary structure
SS confidence
Disorder															?	?	?						?	?																															?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2lf0 chain A Region: 1 - 120 Aligned: 120 Modelled: 120 Confidence: 100.0% Identity: 98% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 Phyre2 PDB 1gk7 chain A Region: 5 - 52 Aligned: 36 Modelled: 48 Confidence: 91.4% Identity: 36% PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) Phyre2 PDB 1t3j chain A Region: 34 - 69 Aligned: 36 Modelled: 36 Confidence: 78.5% Identity: 33% PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant Phyre2 PDB 2a3d chain A Region: 12 - 69 Aligned: 56 Modelled: 58 Confidence: 68.3% Identity: 32% PDB header:three-helix bundle Chain: A: PDB Molecule:protein (de novo three-helix bundle); PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d) Phyre2 PDB 1u0i chain A Region: 35 - 52 Aligned: 18 Modelled: 18 Confidence: 65.6% Identity: 67% PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer Phyre2 PDB 2c5i chain T Region: 6 - 70 Aligned: 65 Modelled: 65 Confidence: 60.3% Identity: 14% PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation Phyre2 PDB 1ce0 chain B Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 40.4% Identity: 41% PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model Phyre2 PDB 1g6u chain B Region: 16 - 57 Aligned: 42 Modelled: 42 Confidence: 30.8% Identity: 26% PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer Phyre2 PDB 2xzr chain A Region: 6 - 54 Aligned: 49 Modelled: 49 Confidence: 29.2% Identity: 27% PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors Phyre2 PDB 1u2u chain A Region: 35 - 52 Aligned: 18 Modelled: 18 Confidence: 24.3% Identity: 61% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper Phyre2 PDB 1gp8 chain A Region: 17 - 38 Aligned: 22 Modelled: 22 Confidence: 23.4% Identity: 32% PDB header:viral protein Chain: A: PDB Molecule:protein (scaffolding protein); PDBTitle: nmr solution structure of the coat protein-binding domain2 of bacteriophage p22 scaffolding protein Phyre2 PDB 1ij2 chain C Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 23.0% Identity: 45% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position Phyre2 PDB 1zta chain A Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 21.7% Identity: 45% PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide Phyre2 PDB 1ij2 chain B Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 21.1% Identity: 45% PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position Phyre2 PDB 3u1a chain C Region: 20 - 54 Aligned: 35 Modelled: 35 Confidence: 20.7% Identity: 23% PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha Phyre2 PDB 1ic2 chain B Region: 20 - 52 Aligned: 33 Modelled: 33 Confidence: 19.3% Identity: 24% PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule Phyre2 PDB 1j1d chain F Region: 9 - 59 Aligned: 46 Modelled: 46 Confidence: 19.2% Identity: 24% PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form Phyre2 PDB 1rb6 chain C Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 18.7% Identity: 45% PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form Phyre2 PDB 1rb1 chain A Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 18.7% Identity: 45% PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 3k7z chain B Region: 33 - 54 Aligned: 22 Modelled: 22 Confidence: 18.7% Identity: 45% PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 1 c2lf0A_ 2 c1gk7A_ 3 c1t3jA_ 4 c2a3dA_ 5 c1u0iA_ 6 c2c5iT_ 7 c1ce0B_ 8 c1g6uB_ 9 c2xzrA_ 10 c1u2uA_ 11 c1gp8A_ 12 c1ij2C_ 13 c1ztaA_ 14 c1ij2B_ 15 c3u1aC_ 16 c1ic2B_ 17 c1j1dF_ 18 c1rb6C_ 19 c1rb1A_ 20 c3k7zB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2lf0A_ 100.0 98 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 2 c1gk7A_ 91.4 36 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) 3 c1t3jA_ 78.5 33 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 4 c2a3dA_ 68.3 32 PDB header:three-helix bundle Chain: A: PDB Molecule:protein (de novo three-helix bundle); PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d) 5 c1u0iA_ 65.6 67 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 6 c2c5iT_ 60.3 14 PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 7 c1ce0B_ 40.4 41 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 8 c1g6uB_ 30.8 26 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 9 c2xzrA_ 29.2 27 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 10 c1u2uA_ 24.3 61 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 11 c1gp8A_ 23.4 32 PDB header:viral protein Chain: A: PDB Molecule:protein (scaffolding protein); PDBTitle: nmr solution structure of the coat protein-binding domain2 of bacteriophage p22 scaffolding protein 12 c1ij2C_ 23.0 45 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 13 c1ztaA_ 21.7 45 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 14 c1ij2B_ 21.1 45 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 15 c3u1aC_ 20.7 23 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 16 c1ic2B_ 19.3 24 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 17 c1j1dF_ 19.2 24 PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form 18 c1rb6C_ 18.7 45 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 19 c1rb1A_ 18.7 45 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 20 c3k7zB_ 18.7 45 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 21 c1rb1B_ not modelled 18.7 45 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 22 c1swiA_ not modelled 18.7 45 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 23 c3k7zA_ not modelled 18.7 45 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 24 c1ij3B_ not modelled 18.7 45 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 25 c1ij3C_ not modelled 18.7 45 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 26 c2ekkA_ not modelled 17.9 55 PDB header:protein binding Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase PDBTitle: solution structure of ruh-074, a human uba domain 27 d1we3a2 not modelled 16.0 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 28 d1kida_ not modelled 16.0 26 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 29 c1wt6B_ not modelled 14.8 30 PDB header:transferase Chain: B: PDB Molecule:myotonin-protein kinase; PDBTitle: coiled-coil domain of dmpk 30 d1sjpa2 not modelled 14.5 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 31 c3he4A_ not modelled 14.5 59 PDB header:de novo protein Chain: A: PDB Molecule:synzip6; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6 32 c2dq3A_ not modelled 13.9 23 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 33 c1yv0I_ not modelled 13.8 22 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 34 c3m6cA_ not modelled 13.8 17 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 1; PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain 35 c2o7hF_ not modelled 13.5 41 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 36 d1dl5a2 not modelled 13.4 35 Fold:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain Superfamily:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain Family:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 37 d1rq2a1 not modelled 13.2 32 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 38 c3ni0A_ not modelled 12.8 32 PDB header:immune system Chain: A: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain 39 d2c0sa1 not modelled 12.5 18 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 40 c3nmdA_ not modelled 12.3 42 PDB header:transferase Chain: A: PDB Molecule:cgmp dependent protein kinase; PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta 41 c2w9kA_ not modelled 11.4 25 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 42 c2etnA_ not modelled 11.3 21 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 43 c3oa7A_ not modelled 10.9 16 PDB header:structural protein Chain: A: PDB Molecule:head morphogenesis protein, chaotic nuclear migration PDBTitle: structure of the c-terminal domain of cnm67, a core component of the2 spindle pole body of saccharomyces cerevisiae 44 c4a19Q_ not modelled 10.7 44 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l36; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 45 c1ytzI_ not modelled 10.5 22 PDB header:contractile protein Chain: I: PDB Molecule:troponin i; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state 46 c1gk4A_ not modelled 10.4 20 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 47 d2nzca1 not modelled 10.3 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 48 c3lpeF_ not modelled 10.3 17 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 49 d2g3qa1 not modelled 9.7 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 50 c3fgaD_ not modelled 9.2 20 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:shugoshin-like 1; PDBTitle: structural basis of pp2a and sgo interaction 51 c2kswA_ not modelled 9.1 50 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:oryctin; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for oryctin 52 d1ivsa1 not modelled 9.0 13 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 53 d5csma_ not modelled 8.8 17 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Allosteric chorismate mutase 54 c3izck_ not modelled 8.7 33 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 55 c2rklB_ not modelled 8.6 24 PDB header:lipid transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vta1; PDBTitle: crystal structure of s.cerevisiae vta1 c-terminal domain 56 d1uklc_ not modelled 8.6 9 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 57 c2l5gB_ not modelled 8.5 24 PDB header:transcription regulator Chain: B: PDB Molecule:putative uncharacterized protein ncor2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 58 d1gqea_ not modelled 8.1 15 Fold:Release factor Superfamily:Release factor Family:Release factor 59 c1gcmA_ not modelled 7.9 38 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 60 c2zkrv_ not modelled 7.9 17 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 61 c1r48A_ not modelled 7.6 37 PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop 62 c3a5tB_ not modelled 7.5 26 PDB header:transcription regulator/dna Chain: B: PDB Molecule:transcription factor mafg; PDBTitle: crystal structure of mafg-dna complex 63 c2wukD_ not modelled 7.5 29 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 64 c1kddC_ not modelled 7.5 56 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 65 c1kddF_ not modelled 7.3 56 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 66 c1kddA_ not modelled 7.3 56 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 67 c3ol1A_ not modelled 7.2 22 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 68 d1oqya1 not modelled 7.2 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 69 c1gcmB_ not modelled 7.1 38 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 70 c3tqmD_ not modelled 7.1 18 PDB header:protein binding Chain: D: PDB Molecule:ribosome-associated factor y; PDBTitle: structure of an ribosomal subunit interface protein from coxiella2 burnetii 71 c2hx6A_ not modelled 7.0 13 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 72 c2a45J_ not modelled 6.9 7 PDB header:hydrolase/hydrolase inhibitor Chain: J: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin 73 c2z9fC_ not modelled 6.8 17 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 74 c1gcmC_ not modelled 6.8 38 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 75 c1sryB_ not modelled 6.7 12 PDB header:ligase(synthetase) Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution 76 c3lt7D_ not modelled 6.5 29 PDB header:cell adhesion Chain: D: PDB Molecule:adhesin yada; PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure 77 d1gpja1 not modelled 6.4 20 Fold:Glutamyl tRNA-reductase dimerization domain Superfamily:Glutamyl tRNA-reductase dimerization domain Family:Glutamyl tRNA-reductase dimerization domain 78 c2xu6B_ not modelled 6.3 22 PDB header:protein binding Chain: B: PDB Molecule:mdv1 coiled coil; PDBTitle: mdv1 coiled coil domain 79 c3h5fC_ not modelled 6.3 29 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 80 c3h5gC_ not modelled 6.3 29 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 81 c3h5fA_ not modelled 6.3 29 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 82 c3h5gA_ not modelled 6.3 29 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 83 c3h5fB_ not modelled 6.3 29 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 84 c3h5gB_ not modelled 6.3 29 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 85 c2e43A_ not modelled 6.2 26 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 86 d1dp7p_ not modelled 6.2 55 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:P4 origin-binding domain-like 87 c2ergA_ not modelled 6.1 22 PDB header:transcription activator/dna Chain: A: PDB Molecule:regulatory protein leu3; PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex 88 c2wt7B_ not modelled 6.1 19 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 89 c1grjA_ not modelled 5.9 7 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 90 d1mska_ not modelled 5.9 45 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain 91 c1ij2A_ not modelled 5.6 48 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 92 c1ofuB_ not modelled 5.5 32 PDB header:bacterial cell division inhibitor Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of sula:ftsz from pseudomonas aeruginosa 93 c2vawA_ not modelled 5.4 32 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 94 c1u7mB_ not modelled 5.3 40 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 95 c3he5A_ not modelled 5.3 32 PDB header:de novo protein Chain: A: PDB Molecule:synzip1; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0