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Job DescriptionP24181
Confidence100.00%DateThu Jan 5 11:40:58 GMT 2012
Rank2Aligned Residues1000
% Identity21%Templatec3k07A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa
Resolution3.52 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSS
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Template Conservation   
                    
      

    
        
    



   

  

  

  
    

  
 
Template Sequence  IIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQIVENQVTYPLTTTMLSVPGAKTVRG
Template Known Secondary structure 
TS


SS






SS

TTTTTSTT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  TSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS
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Template Conservation   
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Template Sequence  FSQ. FGDSYVYVIFEDGTDPYWARSRVLEYLNQVQGKLPAGVSAELGPD. ATGVGWIYEYALVDRSGKHDLADLRSLQDW
Template Known Secondary structure 
.SS
SS

TTTTS
SS




S.

GGGTTS
S
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   85.. ..90.........100.........110.........120.........130.. .......140.........150.........160..
 
   161........170.........180 .........190.........200.........210.........220.........230.........
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Query Sequence  NVKDTLSRLNGVGDVQLFGA. QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR
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Template Conservation       
  
 

  
   
     
 
  
   
   

    
   
   
     
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Template Sequence  FLKYELKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEA. . . . . . EYMVRASGY
Template Known Secondary structure  TTTSTTS


TT

TSS

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   163......170.........180.........190.........200.........210.........220....... ..230......
 
   240.........250.........260.........270.........280.........290. ........300.........310........
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Query Sequence  FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI. KLATGANALDTAKAIKAKLAELQPFFP
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Template Conservation        
    
     
  
 
 


 
             

       
               
           
Template Sequence  LQTLDDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLP
Template Known Secondary structure 

ST

TTS
GGGT


STTT

TTS
GGGS
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   319320.........330.........340.........350.........360.........370.........380.........390........
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Query Sequence  QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM
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Template Conservation   
       
    
   
  
    
    

 


 
 

  
  

    

 
   

      
  

 


  
Template Sequence  EGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI
Template Known Secondary structure  TTT

TT



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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   399400.........410.........420.. .......430.........440.........450.........460........
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Query Sequence  VLAIGLLVDDAIVVVENVERVMME. . . . . . . . . . DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR
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Template Conservation   
 


 






 
 
                 
     
   
   
   

 




  

 

          
 
Template Sequence  AIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFG
Template Known Secondary structure  S
SS


SGGGGG

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   397..400.........410.........420.........430.........440.........450.........460.........470......
 
   469470.........480.........490.........500.........510.........520.........530.........540........
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Query Sequence  QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIV
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Template Conservation           
  
 




  


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Template Sequence  PLAFTKTYAMAGAALLAIVVIPILMGYWPLN. . . . . . . . . . . . . . . . . . . . RFLIRVYHPLLLKVLHWPKTTLLVAALSV
Template Known Secondary structure  T

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   477..480.........490.........500....... ..510.........520.........530......
 
   549550.........560.........570.........580.........590.........600.........610.........620........
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Query Sequence  AGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFV
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Template Conservation           
     
                             
  
     
  
    
                 
Template Sequence  LTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETT
Template Known Secondary structure  TTTT

SS




S
S


TTSTT

SSTT



TT


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   548.550.........560.........570.........580.........590.........600.........610.........620.......
 
   629630.........640.........650.........660.........670.........680.........690.........700........
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Query Sequence  SLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH
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Template Conservation    
                  
                               
     
     
      
   
   
Template Sequence  IQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTV
Template Known Secondary structure 

GGGS
SS



TT
TTTS
SSSSSTTTTS
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   628.630.........640.........650.........660.........670.........680.........690.........700.......
 
   709710.........720.........730.........740.........750.........760.........770.........780........
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Query Sequence  PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKL
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Template Conservation    .
  
               
       
     
   
     
              
              
   
Template Sequence  PG. VASALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQALRQL
Template Known Secondary structure  SS.
S



TTB

TT

TTTT



TT

GGGGSS
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   708. 710.........720.........730.........740.........750.........760.........770.........780......
 
   789790.........800.........810.........820.........830.........840........ .850.........860......
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Query Sequence  YVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLAS. . KLPAGIGYDWTGMSYQER
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Template Conservation   
    
  
 
              
          
                          
 
      
      
Template Sequence  PILTPMKQQITLADVADIKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE
Template Known Secondary structure 
TT



S
TT

SSS




TT
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   787..790.........800.........810.........820.........830.........840.........850.........860......
 
   867..870.........880.........890.........900.........910.........920.........930.........940......
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Query Sequence  LSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVE
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Template Conservation       
      

 





   
 
    



  
 
   
    
 
 
  
   
 

 





 

  
 

 
Template Sequence  RANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLM
Template Known Secondary structure  TS
TTTT

TT
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   867..870.........880.........890.........900.........910.........920.........930.........940......
 
   947..950... ......960.........970.........980.........990.........1000.........1010......
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Query Sequence  FAKDLME. . . . . . . . . . KEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL
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Template Conservation                     
    


  
   
 



 







  

  
   
      

  

 

  

  
Template Sequence  YLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLL
Template Known Secondary structure  SSGGG
SSSS
STTTTTTTTTTS

SSS
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   947..950.........960.........970.........980.........990.........1000.........1010.........1020......
 
   1017..1020.........
Predicted Secondary structure 
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Query Sequence  AIFFVPVFFVVIR
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Template Conservation 

  

 
  
  
Template Sequence  SLFIIPAAYKLMW
Template Known Secondary structure 
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   1027..1030.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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